Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq928 125 9e-24 seq694 107 2e-18 seq1254 95.1 2e-14 seq524 89.7 6e-13 >seq928 Length=80382 Score = 125 bits (138), Expect = 9e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||||||||| ||||| || || || ||||||||| | | ||| | | || Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || |||||||| || ||||| || |||||||| || | || | ||||||| Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| || || |||||||| | || |||| ||||| ||| ||||| |||| | Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||||||||| || | || |||||| || || || || || Sbjct 51888 GTTTTAAAACCAAAGTAATCATAATCAAAGTCACGATCATATATTAT 51934 >seq694 Length=127158 Score = 107 bits (118), Expect = 2e-18 Identities = 247/367 (67%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| ||||| || || || | ||| || || |||||||||||||| | ||| ||| Sbjct 32678 TTTCTGGTACTCCCCAACTCTTTTCTCAAAGAAATTAGTTTTTCCCTGCAAACTGATAAG 32619 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| ||||||||||||| ||||| || ||||||| | | ||||| | | Sbjct 32618 CTCCATCCAATCAAACGGATTTTGCACATTGTACATTTTTTCATACCCCAAAGCCTGCAA 32559 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 | |||||| || || || || || || |||||| |||| ||||||||| | ||| Sbjct 32558 AAGTCTATCGGCCACAAACTCGATGTAAACGCTCATCAGATCACCATTCATTCCCACAAG 32499 Query 33192 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 | || | || |||| || ||||||| | ||||| |||||||| | | | Sbjct 32498 GGCACAAGGTAATGCATCGCA--AACAAATTCTCGCTCAATCACGACCGCATCAGACACA 32441 Query 33250 ATAGATCTAACGGTTTCTTCACTCGG--TG-GATGCAATAAATGTTTAAACATCAAACAT 33306 || ||| || | || ||||| | || | || || | | | | |||||| Sbjct 32440 ATCTCTCTCACCCTCTCCTCACTAAGCTTGTTTTTCAGCAACTCGT---AGAGCAAACAA 32384 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || ||||| ||||| || |||||||||| | ||| | || || || |||||||| || Sbjct 32383 GCAAAATCACAGTGAAGGCCCTCGTCTCGAGAAATCAACTCATTTGAGAACGTGAGACCT 32324 Query 33367 GGCATTA 33373 ||||||| Sbjct 32323 GGCATTA 32317 >seq1254 Length=70693 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | || || || ||||| || ||||| | | || | |||| | Sbjct 36353 GTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACCACCTCTGGGACATGAGATGG 36294 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 ||||| | | | || || |||||| || ||| || || || || || | ||| ||| Sbjct 36293 TACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGCAACTCTCATCAAC 36234 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| || ||||| || || | ||| | |||||||||||||| || | || | Sbjct 36233 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGATTTTCAACAAGTAAGACCTCTCAAGG 36174 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| |||||||| |||| || |||||| || || || ||||| Sbjct 36173 GTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCGGTCATAGATAAT 36127 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || || ||||| | || | ||| |||| ||| |||| | |||||| ||||| ||||| Sbjct 37259 CCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACACGCAACATGGGAATTATACCA 37200 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || ||| | ||||| || || ||||| || || | || || ||||| || ||| Sbjct 37199 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCCCGGATATTGTGAACWGAT 37140 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||| |||||||| || || ||| | ||| ||| ||| || || ||||| || Sbjct 37139 ACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATTCTTTCAAGGTATCATAAATT 37080 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| |||| | || |||||||| Sbjct 37079 CCTTCAATGCTATCATCTTTCATACACACCAGGAAACAGCT 37039 >seq524 Length=308948 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 || || | ||| || ||||| || || | | || ||| || || ||||||||||| Sbjct 106120 AGACCTCTCTTCTTGAGCCAGAAGATAGCACAAAAACTTCCCGAGAAAAAGATTCCTTCC 106179 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGA 33492 || ||||| |||| || ||||| || || | | ||| |||||| | Sbjct 106180 ACACACGCAAAAGCAACAATCCTCTCAGCAAAAGACTCCCCACCATTGATCCACCTCATT 106239 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||| | ||||||||| | ||||| || ||||| || | |||| || || || Sbjct 106240 GCCCATTTGGCCTTCTTCTCAACACAGGGGATCGTCTCCACCGCATGGAACAGCCTGTGC 106299 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 ||||| | ||||| | ||||| |||| ||| | ||||||||| || || || || Sbjct 106300 TTTTCTGCAGAGTCTTTTATGTAAGTCTCGAGCAATAAACTATACATCTCAGAGTGTATA 106359 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAA 33641 || ||||| || ||||| || || ||||| Sbjct 106360 TTCTCAATAGCAATCTGGAACCCATAGAA 106388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622879018428960