Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1083 102 8e-17 seq114 96.9 3e-15 seq187 87.8 2e-12 >seq1083 Length=90715 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| |||| |||||| | |||||| |||| | ||| | Sbjct 36575 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAAACCATCACCCTCGAGGTGGAAGGCTCC 36516 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || ||| || || |||||||| | || || || ||||| Sbjct 36515 GACACAATCGACAACGTGAAATCGAAAATACAGGACAAAGAGTGCATCCCGCCAGATCAG 36456 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTATAA 26947 ||||||||||| | | || ||||||||||| |||| | | || | || |||||| || Sbjct 36455 CAAAGACTCATCTTTGCTGGAAAACAACTCGAGGATGGTCG-CACTTTAGCCGACTACAA 36397 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || |||||| | ||||| || || Sbjct 36396 CATACAGAAGGAGTCTACTCTACATCTCGTGCT 36364 >seq114 Length=372266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/145 (77%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 26857 TTACC--GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACA 26914 ||||| || ||||||||||| || || ||||||||||| | |||| || || ||||| Sbjct 349059 TTACCAGGATAAAGAAGGGATTCCACCTGATCAACAAAGGTTGATTTTCGCTGGAAAACA 349118 Query 26915 ACTCGAAGATGATAGAA-ACGT-CAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||| ||||||| ||| || | || ||||| ||||| |||||||| || || | ||| Sbjct 349119 ACTAGAAGATGGCCGAACACTTGCA--GACTACAACATCCAAAAAGAGTCGACACTTCAT 349176 Query 26973 CTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || || || ||||| |||| Sbjct 349177 CTGGTTCTTAGGCTCAGAGGTGGAA 349201 >seq187 Length=363338 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| |||||| ||||| |||||||| || || ||||| Sbjct 41996 CGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCA 41937 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||| ||||| | | ||| ||||| ||||| || | | | | | |||||| || Sbjct 41936 GCAAAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGTACCCTTGCCGACTACAA 41877 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 ||| || || || || ||| |||| ||||| || || Sbjct 41876 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCAG 41841 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || | |||||| |||| | || | Sbjct 30116 ATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 30057 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || |||||| |||||||||||||| || || || || Sbjct 30056 GACACCATTGATAACGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCCCCAGACCAG 29997 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||| | || |||||| ||||| || || | | | | | ||||| ||| Sbjct 29996 CAAAGGCTCATCTTCGCCGGCAAGCAACTTGAGGACGGACGTACCCTTGCTGACTACAAC 29937 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 || || || |||||||| |||| |||| || || Sbjct 29936 ATCCAGAAGGAATCTACCCTCCACTTGGTGCTCAG 29902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478610010400320