Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq187 104 2e-17 seq1083 98.7 8e-16 seq1646 96.9 3e-15 seq260 89.7 4e-13 seq139 82.4 6e-11 >seq187 Length=363338 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || |||||||||||||| | ||| ||||| Sbjct 41616 AGGACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGTCCGTCC 41675 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| | || |||| |||||| || || | ||||| || || Sbjct 41676 TCAAGCTGTTTACCGGCAAAGATGAGCCTCTGTTGATCTGGGGGAATTCCCTCCTTATCT 41735 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| | ||| || | | | | |||||| | |||| |||| ||||||||| Sbjct 41736 TGAATTTTCGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTC 41795 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || || ||||| ||||| Sbjct 41796 TTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 41827 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 ||| || |||| || || ||||||||||| || |||||||||||||| | ||| | Sbjct 41840 CCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGTCC 41899 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||||| | ||||| || ||| | || |||| || || ||| || | || || || Sbjct 41900 GTCCTCGAGCTGTTTTCCGGCAAAGATGAGCCTTTGCTGATCCGGGGGAATCCCTTCCTT 41959 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 ||| ||| | ||| || | | | | |||||| | |||| || | ||| || Sbjct 41960 GTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTAAT 42019 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||| || || || ||||| || |||||||| Sbjct 42020 GGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCAT 42055 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || || ||||||||||| | ||| ||||| Sbjct 30133 AGGACCAAGTGTAGGGTAGACTCCTTCTGGATATTGTAGTCGGCAAGGGTACGACCGTCC 30192 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || || | || |||| ||| ||||| || | ||||| ||||| Sbjct 30193 TCGAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 30252 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| | ||| || | | | | ||||| | || ||| | ||||||||| Sbjct 30253 TGAATTTTCGCCTTGACATTGTCGATGGTGTCAGAGCTTTCGACTTCAAGGGTGATGGTC 30312 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || ||||| |||||||| Sbjct 30313 TTACCGGTGAGGGTCTTCACAAAGATCTGCAT 30344 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||||||||| | ||| | ||| Sbjct 42072 AGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGTCCATCC 42131 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| | || |||| || || ||| || | ||||| || || Sbjct 42132 TCGAGCTGTTTTCCGGCAAAGATGAGCCTTTGCTGATCCGGGGGAATTCCCTCCTTATCC 42191 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | |||||| | |||| || | ||||||||| Sbjct 42192 TGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTC 42251 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || ||||| || |||||||| Sbjct 42252 TTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 42283 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||||| ||| ||||| Sbjct 30361 AGGACCAGATGAAGGGTACTTTCCTTTTGGATATTGTAGTCGGCCAAGGTACGACCGTCC 30420 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | ||||||| || ||||| ||| | ||||||||| || Sbjct 30421 TCTAGCTGTTTTCCAGCGAATATAAGCCTTTGCTGGTCTGGAGGTATGCCCTCTTTATCC 30480 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | |||||| ||| || | ||||||| Sbjct 30481 TGGATTTTTGC--CTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGG 30538 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || || ||||| |||||||| Sbjct 30539 TCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 30572 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||| || || || || || ||||||| || | | || ||||| || Sbjct 21564 TGAAGAGTAGACTCTTTCTGGATATTATAATCGGCCAAAGTCCTCCCATCTTCCAACTGC 21623 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || | || ||| |||||| || | ||||| || || ||||| | Sbjct 21624 TTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATTTTC 21683 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | || || | |||| |||| |||||| || || ||||| Sbjct 21684 GCCTTCACGTTATCGATCGTATCAGAGCTCTCCACCTCCAAGGTGATAGTCTTCCCGGTA 21743 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||||||||||||| Sbjct 21744 AGGGTCTTGACAAAAATCTGCAT 21766 >seq1083 Length=90715 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| ||||||||||||||||| | || | ||| Sbjct 36364 AGCACGAGATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGCTAAAGTGCGACCATCC 36423 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || ||| | || || | || || || || | || ||||||||| Sbjct 36424 TCGAGTTGTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGGGATGCACTCTTTGTCC 36483 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| | ||||| | | | | |||||| | ||| || | |||||||||| Sbjct 36484 TGTATTTTCGATTTCACGTTGTCGATTGTGTCGGAGCCTTCCACCTCGAGGGTGATGGTT 36543 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || ||||| ||||| |||||||| Sbjct 36544 TTTCCGGTTAGGGTTTTCACAAAGATCTGCAT 36575 >seq1646 Length=84127 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 ||| || |||| || || || |||||||| || ||||||||||| || | ||| | Sbjct 61654 CCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGCCC 61713 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 ||||| | ||| || || || | || |||| ||| |||||| || | |||||| || Sbjct 61714 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTT 61773 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 || ||| | | ||| || | | | | ||||||| ||| || | |||||| Sbjct 61774 ATCTTGAATCTTCGCCTTGACGTTGTCAATAGTGTCGGAACTCTCAACCTCAAGGGTGAT 61833 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| ||||| || || |||||||| |||||||| Sbjct 61834 GGTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 61869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| || |||||||| || | ||| | |||| Sbjct 61886 AGGACCAGGTGGAGGGTGGACTCCTTTTGGATATTGTAGTCAGCTAGGGTGCGGCCGTCT 61945 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| | || |||| ||| ||||| || | ||||||||||| Sbjct 61946 TCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCT 62005 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| | ||| || | | | | ||||| | || ||||| ||| ||||| Sbjct 62006 TGGATTTTCGCCTTGACATTGTCAATGGTGTCAGAGCTTTCAACTTCCAAGGTAATGGTC 62065 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || || || ||||| || ||||| Sbjct 62066 TTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 62097 >seq260 Length=279698 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||| || |||||||| || || | ||| | | ||| Sbjct 162335 AGGACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCATCC 162394 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || || || | || |||| ||| |||||| || | ||||| || || Sbjct 162395 TCGAGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTATCT 162454 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | | |||||| | |||| |||| ||||||||| Sbjct 162455 TGAATTTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTC 162514 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||||||| ||||| || || ||||| Sbjct 162515 TTGCCGGTCAGCGTCTTGACGAAGATTTGCAT 162546 >seq139 Length=432677 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 |||||||| || || | | |||| ||| || |||||||| || || ||||||||||| Sbjct 177645 TACCCTCCCCGCAGGCGTAAAACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAGTCA 177704 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 || | || | || ||||| ||||| || ||| | || |||| ||| ||||| Sbjct 177705 GCTAAAGTCCGTCCATCTTCCAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCTGGT 177764 Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 || | ||||| || || ||| | |||||| | | | |||||| |||| Sbjct 177765 GGGATCCCCTCCTTATCTTGAATCTTAGCCTTCACATTATCAATAGTGTCTGAACTCTCC 177824 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||| || |||| ||| || ||||| || ||||| Sbjct 177825 ACCTCCAATGTGATCGTTTTCCCCGTCAACGTCTTAACAAAGATTTGCAT 177874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405044771540440