Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1646 120 3e-22 seq187 113 4e-20 seq139 107 2e-18 seq114 105 6e-18 seq771 104 2e-17 seq1470 100 2e-16 >seq1646 Length=84127 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | ||||| || |||| || | ||||| || ||| Sbjct 62097 ATGCAAATCTTTGTAAAGACTCTCACCGGAAAGACCATTACCTTGGAAGTTGAAAGCTCT 62038 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| |||||| |||||||| || || ||||| |||| Sbjct 62037 GACACCATTGA--CAATGTCAAGGCGAAAATCCAAGACAAAGAGGGTATCCCACCAGACC 61980 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||| ||||| | ||||| | ||||| | | || |||| Sbjct 61979 AGCAGAGGCTCATCTTTGCCGGTAAACAGCTCGAAGACGGCCGCACCCTAGCTGACTACA 61920 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||| || ||||| || || | || || | || ||||| || Sbjct 61919 ATATCCAAAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCAGAGGTGG 61871 >seq187 Length=363338 Score = 113 bits (124), Expect = 4e-20 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || | ||||| | || |||||| ||| Sbjct 21766 ATGCAGATTTTTGTCAAGACCCTTACCGGGAAGACTATCACCTTGGAGGTGGAGAGCTCT 21707 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| | || ||||| | |||| ||| || || || || ||||| || |||| Sbjct 21706 GATACGATCGA-TAACGTGAAGGCGAAAATTCAG-GATAAGGAGGGTATTCCCCCGGACC 21649 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||||||||| || || ||||||| | ||| ||| |||||| | Sbjct 21648 AGCAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATA 21589 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| || ||||| || || || || Sbjct 21588 ATATCCAGAAAGAGTCTACTCTTCA 21564 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| ||||| | || || || ||||||| | || |||||| || Sbjct 22679 AATGCAGATATTTGTCAAGACGCTTACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTC 22620 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || || || |||| || | ||| ||||| ||||||||||| || || Sbjct 22619 CGACACCATAGA--CAATGTTAAAGCCAAGATTCAG-GACAAGGAAGGGATTCCCCCGGA 22563 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || |||||||| ||||| | || || | ||| || | | || || Sbjct 22562 TCAGCAGAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGTCGTACGCTAGCTGACTA 22503 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || ||| || |||| || || ||| | | ||||| || Sbjct 22502 CAATATCCAGAAGGAAAGTACCTTACACTTGGTCCTACGTTTGAGAGGTGG 22452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || ||||||| | || || || ||| Sbjct 22450 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGTTCT 22391 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||| ||||||||||| || ||| Sbjct 22390 GACACCATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAAGGGATTCCCCCAGAC 22334 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || ||||| ||||| | || || | || || | | |||||| Sbjct 22333 CAGCAGAGGCTCATCTTCGCCGGTAAACAGCTTGAGGACGGRCGTACCCTAGCTGATTAC 22274 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || || || ||||| ||| | || || || Sbjct 22273 AACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCAGGTTGAGGGGTGG 22224 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| |||| || ||| || Sbjct 30116 ATGCAGATCTTTGTCAAGACTCTTACGGGCAAGACCATCACCCTCGAGGTTGAGAGTTCC 30057 Query 25059 GACACTATCGAGTCACTGAA--GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || || || || | ||| |||||||||||||| || || |||| Sbjct 30056 GACACCATTGA-TAACGTAAAGGCCAAGATTCAG-GACAAAGAAGGGATCCCCCCAGACC 29999 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || || |||||||| ||| | || || | || || | | || |||| Sbjct 29998 AGCAAAGGCTCATCTTCGCCGGCAAGCAACTTGAGGACGGACGTACCCTTGCTGACTACA 29939 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || || ||||| || || || || ||||| ||| | || || || Sbjct 29938 ACATCCAGAAGGAATCTACCCTCCACTTGGTGCTCAGGTTGAGGGGTGG 29890 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||||||||| || ||||| | ||||| || |||| || |||| || ||| Sbjct 42516 AACAGATGCAAATATTCGTCAAGACACTCACCGGCAAGACCATTACTCTCGAGGTCGAGA 42457 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| ||||| | ||| |||||| || || || || ||||| || | Sbjct 42456 GCTCCGACACCATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAGGGAATTCCTCCAG 42397 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||| || | || |||||||| ||||| | || || | |||||| | | || | Sbjct 42396 ACCAGCAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGACGGTCGCACCCTAGCTGACT 42337 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||| || || || ||||| || || Sbjct 42336 ACAATATACAGAAGGAGTCCACTCTCCA 42309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || | ||||| | || || ||| ||| Sbjct 21994 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACGATCACTTTGGAGGTCGAGAGTTCT 21935 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||||||||| || || || Sbjct 21934 GACACAATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCGGATCAG 21875 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||||| || || | | |||||| || Sbjct 21874 CAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAAGATGGACGTACCCTTGCCGATTATAAC 21815 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || || || ||||| Sbjct 21814 ATCCAGAAGGAATCAACCCTTCACTTGGTGCT 21783 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || |||| || | || |||||| || Sbjct 42055 ATGCAGATCTTCGTCAAGACCCTTACGGGAAAGACCATTACCCTTGAGGTGGAGAGCTCC 41996 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || || | ||| ||||| ||||||||||| || || Sbjct 41995 GACACCATCGACAACGTCA---AGGCCAAGATTCAG-GACAAGGAAGGGATTCCCCCGGA 41940 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || |||||||| ||||| | || || | || || | | ||| || Sbjct 41939 TCAGCAAAGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGTACCCTTGCCGACTA 41880 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || || ||||| || || | ||||| ||| | || || || Sbjct 41879 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCAGGTTGAGGGGTGG 41829 >seq139 Length=432677 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||||||| |||| ||| | || || ||| ||| Sbjct 178330 ATGCAGATCTTTGTTAAGACCTTGACCGGTAAAACCATTACACTTGAGGTTGAGAGCTCT 178271 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| || ||||| || ||||| || || || Sbjct 178270 GATACAATCGACAACGTAAAGGCGAAGATCCAGGATAAAGAGGGTATTCCTCCAGATCAG 178211 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| |||||||| || || | ||||||| |||||| | | || || || Sbjct 178210 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTATAAC 178151 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || |||| || || || Sbjct 178150 ATTCAGAAGGAGTCGACTTTACACTTGGTTCT 178119 >seq114 Length=372266 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || |||||||||||||||||||| ||||| || | ||||| || || |||||| ||||| Sbjct 349066 GATAAAGAAGGGATTCCACCTGATCAACAAAGGTTGATTTTCGCTGGAAAACAACTAGAA 349125 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| || || | | || ||||| || |||||||| || || || ||| | || || Sbjct 349126 GATGGCCGAACACTTGCAGACTACAACATCCAAAAAGAGTCGACACTTCATCTGGTTCTT 349185 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 349186 AGGCTCAGAGGTGGAA 349201 >seq771 Length=161796 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||| | || || || ||||||| | || || ||| || Sbjct 43498 ATGCAGATATTCGTCAAGACCCTCACAGGGAAGACCATCACTTTGGAGGTCGAGAGCTCC 43557 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || | ||| || ||| ||||| ||||||||||| |||||||| Sbjct 43558 GACACCATTGA-TAACATCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCTGACCA 43616 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || ||||| || ||| ||| | ||| ||| |||||| || Sbjct 43617 GCAGAGGTTGATCTTTGCTGGGAAACAGTTGGAATATGGGAGGACTTTGGCCGATTATAA 43676 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || ||||| Sbjct 43677 CATCCAGAAAGAGTCTACTCTACA 43700 >seq1470 Length=49555 Score = 100 bits (110), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || |||||| | || || || ||||||| | || || || || Sbjct 31072 ATGCAGATATTCGTCAAGACTCTTACGGGAAAGACCATCACTTTGGAGGTCGAAAGTTCC 31131 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | || | ||| || ||| ||||| ||||||||||| || ||||| Sbjct 31132 GACACTATTGA-TAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGACCA 31190 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| ||||| | || || | || || | | ||| ||||| Sbjct 31191 GCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAGGACGGACGTACYCTTGCCGACTACAA 31250 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || || ||||| ||| | || || || Sbjct 31251 CATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCAGGTTGAGGGGTGG 31298 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || | ||||| ||||||| || || Sbjct 30844 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACGATCACCCTCGAAGTCGAAAGTTCC 30903 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| ||||||||||| || ||||| Sbjct 30904 GACACTATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGACCAG 30963 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| ||||| | || |||| || || | | || ||||| Sbjct 30964 CAAAGGTTGATCTTTGCCGGGAAACAGCTTGAGGATGGGCGTACCCTTGCTGACTACAAC 31023 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || || || || || Sbjct 31024 ATCCAGAAGGAATCGACCCTCCACTTGGTACT 31055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433281757944140