Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq194 217 2e-51 seq471 95.1 1e-14 seq60 95.1 1e-14 seq407 84.2 2e-11 >seq194 Length=269275 Score = 217 bits (240), Expect = 2e-51 Identities = 249/332 (75%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 167774 TTTGGTGTTGCA-GCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGAC 167832 |||||||| ||| || |||||| ||||| | || || | || || || ||||| ||||| Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 167833 GCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGC 167892 | | ||||| || ||||||||||||||||| ||| | |||| | || ||||| | ||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 167893 AATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTT 167952 || ||||||| ||| || || |||||| | | |||||||||||| ||||| || || Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 237096 Query 167953 CAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATT 168012 | || ||| | | ||||| | || ||||||||||| ||||| || |||||||| || Sbjct 237097 CCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTT 237156 Query 168013 CTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCT 168072 ||||| ||||| ||||| ||||||| ||||| |||||||| || ||||||||| | Sbjct 237157 TTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 237216 Query 168073 TTTCGTTCCTGTCATGGGACTTTGGACAAGTT 168104 || || || || | || | |||| ||||| Sbjct 237217 ATTTGTACCAGTAACCGGTTTATGGA-AAGTT 237247 >seq471 Length=100806 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 167471 AATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTA 167530 |||||| | ||||| ||||| || | |||||| | | | | |||||| | | || Sbjct 70226 AATTTTTTAACGGCTGCAGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTA 70285 Query 167531 CTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGG 167590 || ||||||||| | | || || ||||| | | ||||| || | || || || ||| Sbjct 70286 CTCTGGGGTCCTAAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGG 70345 Query 167591 GCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAG 167650 ||||||| || |||||||| || || | || ||||| || ||| | | |||||||| Sbjct 70346 ACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAA 70405 Query 167651 ATAAGTAGACTAGTAGGTA--TCCGTCCTTACAATGCGATTGCTTTTTCTGGTCC 167703 | | || || ||| | |||||||| ||||||||||| || ||||| || Sbjct 70406 CTTGCTCGATCTGT--GTAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 168095 TGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTG 168154 |||| ||| || |||| | |||| || || | || | |||||||||||||| || Sbjct 267600 TGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTT 267541 Query 168155 TCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATC 168214 | |||| || || | |||||||| ||||| || ||||| |||||||| || ||||| || Sbjct 267540 TMTCAGRAAATTCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATT 267481 Query 168215 CTCCTCAATGAAGGACTCCGTGCCTGGA 168242 ||| | || || || | ||||| |||| Sbjct 267480 CTCTTAAACGAGGGTATTCGTGCTTGGA 267453 >seq407 Length=272206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 167792 TTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATG 167851 ||| |||| | || || | || || || ||||| |||||| | || | || |||||| Sbjct 61894 TTTCGATTTATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATG 61953 Query 167852 ATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTA 167911 ||||||||||| ||| | |||| | || ||||| | ||| || |||||| || | Sbjct 61954 ATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTC 62013 Query 167912 GAGAATACTCTGTATGAAGATGGTGA 167937 || |||||| | | |||||||||||| Sbjct 62014 GAAAATACTTTATTTGAAGATGGTGA 62039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567169916457600