Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq275 93.3 5e-14 seq823 86.0 7e-12 seq765 86.0 7e-12 seq178 86.0 7e-12 seq1068 84.2 2e-11 seq4954 82.4 8e-11 seq260 82.4 8e-11 seq79 82.4 8e-11 >seq275 Length=310906 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/117 (79%), Gaps = 8/117 (7%) Strand=Plus/Plus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG 126318 || || ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| Sbjct 234644 ATATAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGA 234701 Query 126319 GA----GCGTGGGTTCGAACCCCACACCTGACAAATTA--TTATTGGAATTTTTGTT 126369 || |||||||||| || ||||| |||||| ||| ||||| | |||||||| Sbjct 234702 GAGAGGGCGTGGGTTCAAATCCCACTTCTGACATTTTATTTTATTTCATTTTTTGTT 234758 >seq823 Length=112372 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/105 (79%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 22142 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 22085 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| | |||||| || | ||||| || Sbjct 22084 GGGTTCAAATCCCACAGCTGTC--ATTATTTTTTTACTTTTTTTT 22042 >seq765 Length=107887 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/110 (79%), Gaps = 9/110 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 27508 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGWGAGAGG 27565 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA-AATTATTATTGG--AATTTTTG 126367 |||||||||| || ||||| |||||| ||||| |||| ||||||| Sbjct 27566 GCGTGGGTTCAAATCCCACTTCTGACATTTTTATTTTTGGTTTATTTTTG 27615 >seq178 Length=393433 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/92 (82%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 354947 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 354890 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||| || ||||| ||||||| ||| Sbjct 354889 GCGTGGGTTCAAATCCCACTTCTGACAAGTTA 354858 >seq1068 Length=162906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/109 (78%), Gaps = 9/109 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 4515 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 4572 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||| || ||||| |||||| | || || ||||||| || Sbjct 4573 GCGTGGGTTCAAATCCCACTTCTGACA---TGTTCTTTTAATTTTTATT 4618 >seq4954 Length=1794 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1410 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 1467 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1468 GCGTGGGTTCAAATCCCACTTCTGACA 1494 >seq260 Length=279698 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 130320 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 130377 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 130378 GCGTGGGTTCAAATCCCACTTCTGACA 130404 >seq79 Length=330325 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/97 (80%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 75019 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 74962 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 ||||||||| || ||||| ||||| ||| ||| ||| Sbjct 74961 CGTGGGTTCAAATCCCACTTCTGAC-AATAATTTTTG 74926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556799851585440