Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1083 95.1 9e-15 seq260 89.7 4e-13 seq187 82.4 5e-11 >seq1083 Length=90715 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| |||| || |||||||| ||| | || ||||| | | Sbjct 36575 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAAACCATCACCCTCGAGGTGGAAGGCTCC 36516 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | || ||||| || |||||| | | || | | || Sbjct 36515 GACACAATCGACAACGTGAAATCGAAAATACAGGACAAAGAGTGCATCCCGCCAGATCAG 36456 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| ||||||||||| |||||||| || ||| ||| | ||||| ||||| Sbjct 36455 CAAAGACTCATCTTTGCTGGAAAACAACTCGAGGATGGTCGCACTTTAGCCGACTACAAC 36396 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| |||||||| ||| | || | |||||| |||| || Sbjct 36395 ATACAGAAGGAGTCTACTCTACATCTCGTGCTCCGTTTAAGAGGCGG 36349 >seq260 Length=279698 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || ||||| ||||| || |||| || | || Sbjct 162774 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACTCTGGAGGTCGAGAGCTCA 162715 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| |||||| ||||||||||| | ||| | |||| Sbjct 162714 GACACCATCGACAACGTTAAGGCAAAAATCCAAGATAAAGAGGGAATCCCTCCAGACCAG 162655 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| ||||| ||||| ||||| || || ||| || | ||||| || || Sbjct 162654 CAAAGACTCATCTTCGCTGGAAAACAGCTCGAGGATGGTCGTACCCTTGCCGACTATAAC 162595 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||| ||| || || |||| |||||||| |||| || Sbjct 162594 ATCCAGAAGGAAAGTACCCTACACTTGGTCCTACGTTTAAGAGGTGG 162548 >seq187 Length=363338 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||||||||| ||||| | |||| || || ||||| || ||||| ||||| ||||| Sbjct 30479 GATAAAGAGGGCATACCTCCAGACCAGCAAAGGCTTATATTCGCTGGAAAACAGCTAGAG 30420 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 || || ||||||| |||||||| || |||||| ||| |||||| |||| || Sbjct 30419 GACGGTCGTACCTTGGCCGACTACAATATCCAAAAGGAAAGTACCCTTCATCTGGTCCTA 30360 Query 22047 CGT 22049 ||| Sbjct 30359 CGT 30357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358086583159624