Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq187 104 2e-17 seq1646 95.1 1e-14 seq260 89.7 4e-13 >seq187 Length=363338 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||||| || || || ||||||||||| ||| | ||||| || ||||| |||||||| Sbjct 22254 GTAGACTCCTTCTGGATGTTGTAATCAGCT-AGGGTACGYCCGTCCTCAAGCTGTTTACC 22312 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| | ||| ||||| || ||||| ||||| ||||| |||||| || Sbjct 22313 GGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGAATCTTGGCCTT 22372 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | ||| || || | ||| | || ||||| || ||||| Sbjct 22373 GACATTGTCAATGGTGTCAGAACTTTCAACCTCAAGGGTGATGGTCTTGCCAGTAAGAGT 22432 Query 114365 TTTTACAAAAATCTGCATG 114383 || ||||| || |||||| Sbjct 22433 CTTGACAAAGATTTGCATG 22451 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || |||||||| || | ||||| || |||||||| || || Sbjct 29920 GTAGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGTCCGTCCTCAAGTTGCTTGCCG 29979 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | || ||||| || || || ||||||||||| |||||| ||| Sbjct 29980 GCGAAGATGAGCCTTTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTGAATCTTGGCCTTT 30039 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || | ||| | || ||||| || ||||| Sbjct 30040 ACGTTATCAATGGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCCGTAAGAGTC 30099 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 30100 TTGACAAAGATCTGCATG 30117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | ||| || || | ||| || || || ||||||||||| Sbjct 21993 ATACCACCACGGAGACGTAGAACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCA 22052 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | || || || || || |||||||| ||| ||||||| | ||| || ||||| Sbjct 22053 GCT-AGGGTGCGGCCGTCCTCCAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGG 22111 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || ||||| ||| || || | | || | |||||||| | || Sbjct 22112 GGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTC 22171 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||||| || || ||||| || ||||| Sbjct 22172 AACCTCCAAGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATTTGCAT 22222 >seq1646 Length=84127 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || | ||||| ||| || ||||| || || Sbjct 61673 GTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGCCCATCCTCGAGTTGCTTTCCG 61732 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| |||||||| |||||||| || || || |||||| || Sbjct 61733 GCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTG 61792 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| || || || | ||| | ||||||||||| || || Sbjct 61793 ACGTTGTCAATAGTGTCGGAACTCTCAACCTCAAGGGTGATGGTTTTGCCGGTAAGGGTC 61852 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 61853 TTGACAAAGATCTGCAT 61869 >seq260 Length=279698 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | || || || | ||| || || || ||||||||||| Sbjct 162317 ATACCACCACGGAGACGTAGGACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCA 162376 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||||| ||| || ||||| ||||| ||| |||| || | ||| |||||||| Sbjct 162377 GCT-AGGGTACGGCCATCCTCGAGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCCGG 162435 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || || || ||| || || | | || | |||||||| | || Sbjct 162436 GGGAATTCCCTCCTTATCTTGAATTTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTC 162495 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||||||||| || || || || || ||||| Sbjct 162496 CACCTCCAAGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATTTGCAT 162546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420089565882672