Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq694 91.5 3e-13 seq524 87.8 3e-12 >seq694 Length=127158 Score = 91.5 bits (100), Expect = 3e-13 Identities = 209/313 (67%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 42470 CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 || ||| ||||||| ||||| ||| ||||| || ||| || ||||||||||| Sbjct 31474 CAACAGATTCATGACTGAGGTCCAGGTGGCCGAGGCCCGTGCCTTTTATGGCTTCCAGAT 31533 Query 42530 AGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGA 42589 || || |||||| | || |||||| |||| | ||||| | ||||| || ||| Sbjct 31534 TGCAATTGAGAACATACATTCTGAGATGTATAGCTTGTTGCTCGAGACGTATATAAAGGA 31593 Query 42590 TCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAA 42649 |||| ||| || ||||||| | || | ||||| || || || || | | ||| Sbjct 31594 TCCCAATGAGAAACACAGGCTGTTTCATGCAGTTGAGACCATCCCGTGTGTCGAAAGGAA 31653 Query 42650 GGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGT 42709 ||| | ||||| | | |||||| | || | | |||| | |||||| | || Sbjct 31654 GGCTAAGTGGGCCATGAGATGGATCAATGGT---GGGGAGTCGTTTGCTGAGAGGATTGT 31710 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 || ||| | || ||||| || || ||||| || |||| ||||||||||||| Sbjct 31711 TGCTTTTGCTTGTGTTGAGGGGATTTTTTTCTCTGGTAGCTTCTGTGCCATCTTCTGGCT 31770 Query 42770 CAAGCAGA-AGGT 42781 |||| ||| |||| Sbjct 31771 CAAGAAGAGAGGT 31783 >seq524 Length=308948 Score = 87.8 bits (96), Expect = 3e-12 Identities = 209/314 (67%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 42469 CCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGA 42528 ||| ||||||||||| ||||| ||| ||| || || |||||| || ||||||| Sbjct 106432 CCAACAGGTTCATGACTGAGGTCCAGGTGGCTGAAGCCCGAGCCTTCTATGGGTTCCAGA 106373 Query 42529 TAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGG 42588 | || || ||||| | ||||||||| |||| | ||||| | || ||||| | Sbjct 106372 TTGCTATTGAGAATATACACTCTGAGATGTATAGTTTATTGCTCGAGACTTACATAAAAG 106313 Query 42589 ATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGA 42648 | | | || || |||||||| | || |||||||||| ||||| | |||||| Sbjct 106312 ACTCTGCAGAAAAGCACAGGCTGTTCCATGCGGTGGAGACGATCCCCTGTGTTGAGAAGA 106253 Query 42649 AGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGG 42708 |||| | ||||| | | |||||| | || | | | || | |||||| | | Sbjct 106252 AGGCCAAATGGGCAATGAGGTGGATCAATGGT---GGGGAGTCTTTTGCTGAGAGGATTG 106196 Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768 | || ||| | || || || ||||| |||||||| || | |||||||||| Sbjct 106195 TTGCTTTTGCGTGTGTGGAAGGAATCTTTTTCTCGGGAAGTTTTTGTGCTATCTTCTGGC 106136 Query 42769 TCAAGCAGA-AGGT 42781 ||||| ||| |||| Sbjct 106135 TCAAGAAGAGAGGT 106122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944235842074560