Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq139 105 5e-18 >seq139 Length=432677 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || |||||||||||||| || ||||||||||||||||| || || Sbjct 178560 CCACCTCTAAGACGGAGCACCAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGCT 178619 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || || | ||||| || ||||| || || | ||||||||| ||| Sbjct 178620 AGGGTTCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATTAGCCTCTGCTGATCTGTCGGG 178679 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCG 34077 | || ||||||||| | | ||||| | || ||| ||| |||||| | ||| Sbjct 178680 ATGCCCTCTTTGTC--TTGTATTTTGGAT-TTGACACTTTCGACAGTATCAGGACTTTCC 178736 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| || |||||||| || ||||| ||||| || ||||| Sbjct 178737 ACATCGAGGGTTATAGTCTTTCCGGTAAGGGTTTTGACAAATATCTGCAT 178786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397020027982312