Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq187 123 3e-23 seq1646 116 4e-21 seq260 116 4e-21 seq1083 109 6e-19 seq139 91.5 2e-13 >seq187 Length=363338 Score = 123 bits (136), Expect = 3e-23 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | |||| ||| | || || |||||||| |||||||| || || Sbjct 30345 ACCACCCCTGAGACGTAGGACCAGATGAAGGGTACTTTCCTTTTGGATATTGTAGTCGGC 30404 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| |||||||| || ||||||||||| || | |||||||| | || Sbjct 30405 CAAGGTACGACCGTCCTCTAGCTGTTTTCCAGCGAATATAAGCCTTTGCTGGTCTGGAGG 30464 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATT 42156 | || ||| || ||| ||||||| |||| ||| | | | |||||| ||| | Sbjct 30465 TATGCCCTCTTTATCCTGGATTTTTGCCTTGA-CGTTGTCGATGGTGTCGGAACTC---T 30520 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 30521 CGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 30572 Score = 120 bits (132), Expect = 3e-22 Identities = 159/214 (74%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| || |||||||| || || ||||||||||| || || || |||| || Sbjct 22014 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTGCGGCCGTCCTCC 22073 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| ||||| ||||| ||||| | |||||| || | || | | |||||||| | || Sbjct 22074 AGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTGT-CTTG 22132 Query 42120 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 | |||| | |||| ||| | | | ||||| |||| || || || | ||||||| Sbjct 22133 AATTTTGGCCTTGA-CGTTGTCTATGGTGTCGGAGCTC---TCAACCTCCAAGGTGATGG 22188 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || | |||||| |||||||||||||| Sbjct 22189 TCTTGCCGGTCAACGTCTTGACAAAGATTTGCAT 22222 Score = 105 bits (116), Expect = 7e-18 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || | | |||||| || | || |||||| || || ||||||||||| Sbjct 22223 ACCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 22282 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || ||||| ||||| ||||| ||||| | ||||||||| | || Sbjct 22283 TAGGGTACGYCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCTGGGGG 22342 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| ||| | || | |||| | | | ||||| ||| | Sbjct 22343 AATCCCTTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAACTTTCAA 22401 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| ||||| || || ||||| |||||||||||||| Sbjct 22402 CCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 22450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| || |||||| || || ||||||||||| || || ||| | Sbjct 29445 ACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAGGGTACGCCC 29504 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| || || || || || | | ||||||||| | || | | |||||| Sbjct 29505 ATCCTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCCTCCTT 29564 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 ||| ||| | || | || | | | | |||||| |||| ||||| || | | Sbjct 29565 ATCC-TGAATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTC---TCCACCTCCAAGG 29620 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || ||||| || || ||||||||||| Sbjct 29621 TGATAGTCTTCCCAGTCAGCGTTTTGACGAAGATTTGCAT 29660 >seq1646 Length=84127 Score = 116 bits (128), Expect = 4e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| ||||| | ||||| || | ||||||||||| || |||||||| || || Sbjct 62098 ACCACCTCTCAAACGTAGGACCAAGTGTAGGGTGCTCTCCTTCTGGATATTGTAGTCGGC 62157 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || |||| |||||| || || || ||||| | ||||||||| | || Sbjct 62158 TAGGGTACGACCATCTTCTAACTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 62217 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | ||| || ||| ||| |||| | |||| ||| | | | || ||| ||| Sbjct 62218 AATACCCTCTTTATCC-TGAATTTTAGCCTTGA-CGTTGTCGATGGTATCGGAGCTTTCG 62275 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 62276 ACCTCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 62325 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | |||| || | ||| ||||||||| |||||||| ||||| Sbjct 61870 ACCACCTCTGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTTTGGATATTGTAGTCAGC 61929 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || ||||| ||||| || || ||||| | ||||||||| | ||| Sbjct 61930 TAGGGTGCGGCCGTCTTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGG 61989 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||| ||||| |||||| |||| | | | ||||| ||| ||| Sbjct 61990 GATACCCTCTTTGTCTTGGATTTTCGCCTTGACATTGTCAATGGTGTCAGAGCT---TTC 62046 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || || |||||||||||||||||||| Sbjct 62047 AACTTCCAAGGTAATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 62097 Score = 100 bits (110), Expect = 3e-16 Identities = 155/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || |||||| || || ||||| ||||| || || ||| | || || Sbjct 61660 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGCCCATCCTC 61719 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||| || ||||| ||||| | ||||||||| | || | || |||||| || | Sbjct 61720 GAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCT-T 61778 Query 42119 GATTTTTTGT-TTGAGCGTCGCCACC-GTGTCG---CTCGATTCCACATCGACCGTGATG 42173 || | || | |||| ||| | || |||||| ||| || || || | |||||| Sbjct 61779 GAATCTTCGCCTTGA-CGTTGTCAATAGTGTCGGAACTC---TCAACCTCAAGGGTGATG 61834 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||| || || ||||| |||||||| ||||| Sbjct 61835 GTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 61869 >seq260 Length=279698 Score = 116 bits (128), Expect = 4e-21 Identities = 158/214 (74%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| || |||||||| || || ||||||||||| || || || | || || Sbjct 162338 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTACGGCCATCCTCG 162397 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || |||||||| ||||| || || | ||||||||| | || | | |||||| | | || Sbjct 162398 AGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTAT-CTTG 162456 Query 42120 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 | |||| | |||| ||| | | | ||||| |||| ||||| || | ||||||| Sbjct 162457 AATTTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---TCCACCTCCAAGGTGATGG 162512 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || |||||||| || ||||||||||| Sbjct 162513 TCTTGCCGGTCAGCGTCTTGACGAAGATTTGCAT 162546 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||| | ||||| || | || || ||||| || || || || || || Sbjct 162548 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTACTTTCCTTCTGGATGTTATAGTCGGCA 162607 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| || |||||||| ||||||| |||||||| | || Sbjct 162608 AGGGTACGACCATCCTCGAGCTGTTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGAGGG 162667 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||| || | | || |||||| | | ||| | | | ||||| |||| || Sbjct 162668 ATTCCCTCTTTAT-CTTGGATTTTTGCCTTAACGTTGTCGATGGTGTCTGAGCTC---TC 162723 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 162724 GACCTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 162774 >seq1083 Length=90715 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||||||| | ||| | ||| | || |||||| || || ||||| || || Sbjct 36348 ACCGCCTCTTAAACGGAGCACGAGATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGC 36407 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | ||| || | || || || || || ||||| || ||||||| ||||| || | || Sbjct 36408 TAAAGTGCGACCATCCTCGAGTTGTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGG 36467 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || ||| |||||| || |||| | || ||| | | | |||||| ||||| Sbjct 36468 GATGCACTCTTTGTCC-TGTATTTTCGATTTCACGTTGTCGATTGTGTCGGAGCCTTCCA 36526 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| ||||||||||| || ||||| || || |||||||| ||||| Sbjct 36527 CCTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACAAAGATCTGCAT 36575 >seq139 Length=432677 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||||||||| || || || |||| || |||||||| || || || Sbjct 178368 TCCTTTTGAATGTTGTAATCAGCAAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCAAAG 178427 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 ||||| | |||||| || | || | | |||||||| | ||| | ||||| |||| | Sbjct 178428 ATGAGCCTCTGCTGATCTGGCGGAATACCCTCCTTGT-CTTGAATCTTTGTCTTGACATT 178486 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | || || |||| || || || | || || || || || || || || || Sbjct 178487 ATCGATGGTATCCGAGCTC---TCAACCTCTAGAGTAATAGTCTTTCCAGTGAGGGTTTT 178543 Query 42194 TACAAAGATTTGCATT 42209 ||||||||||||||| Sbjct 178544 CACAAAGATTTGCATT 178559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | ||||||||| | ||| |||||| || || ||||||| || Sbjct 177876 CCTCCCCTCAAACGGAGCACCAAATGAAGTGTCGACTCCTTCTGTATGCTGTAATCTGCA 177935 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| ||||||||||| || ||||| || || | |||||| || | || Sbjct 177936 AGTGTACGACCGTCCTCTAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGAGGA 177995 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | ||| || ||| ||| ||| || | | | | || || ||| || Sbjct 177996 ATACCCTCTTTATCCTGGATCTTTGCCTTAACATTATCGATTGTATCAGAACTC---TCG 178052 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| ||||| || | ||||| ||||| || ||||| Sbjct 178053 ACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATCTGCAT 178102 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | ||||| ||| | || ||||| ||||| ||||| ||||| Sbjct 178560 CCACCTCTAAGACGGAGCACCAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGCT 178619 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| ||||| || || || | |||||| || | || Sbjct 178620 AGGGTTCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATTAGCCTCTGCTGATCTGTCGGG 178679 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||| ||||| ||||| ||||| | | || || || ||||||| Sbjct 178680 ATGCCCTCTTTGTCTTGTATTTTGGATTTGACACTTTCGACAGTATCAGGACTTTCCACA 178739 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || || || || || || ||||| || ||||| Sbjct 178740 TCGAGGGTTATAGTCTTTCCGGTAAGGGTTTTGACAAATATCTGCAT 178786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543153345359040