Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1083 102 8e-17 seq771 96.9 3e-15 seq187 96.9 3e-15 seq1470 95.1 1e-14 seq1646 91.5 1e-13 seq260 82.4 8e-11 >seq1083 Length=90715 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| ||||| | || | ||||| | |||||||| || |||||||||||| Sbjct 36349 CCGCCTCTTAAACGGAGCACGAGATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGCT 36408 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||||||||| || | | |||| || | || || || || || Sbjct 36409 AAAGTGCGACCATCCTCGAGTTGTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGGG 36468 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || | |||||||| || |||| | ||| | ||| || | ||||||| |||| Sbjct 36469 ATGCACTCTTTGTC-CTGTATTTTCGATTTCACGTTG-TCGATTGTGTCGGAGCCTTCCA 36526 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | ||||| || || || ||||| ||||| |||||||| Sbjct 36527 CCTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACAAAGATCTGCAT 36575 >seq771 Length=161796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || || |||| | | ||||||||||| || || ||||| Sbjct 43268 CCACCTCTCAAACGTAGGACCAAGTGTAGGGTGGACTCCTTTTGGATATTATAGTCAGCA 43209 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || ||||| |||| | |||| || | ||| ||||| ||||| Sbjct 43208 AGGGTACGACTGTCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 43149 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || || | || | |||| ||| || | |||||| | ||| | Sbjct 43148 ATACCCTCCTTATC-CTGGATCTTGGCCTTAACGTTG-TCGATGGTGTCTGAGCTCTCGA 43091 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || || || || || ||||| |||||||| Sbjct 43090 CCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTAACAAAGATCTGCAT 43042 >seq187 Length=363338 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 41601 CCACCACGAAGACGTAGGACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 41660 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || |||||||||| | |||| || | |||||| || || || Sbjct 41661 AGGGTACGTCCGTCCTCAAGCTGTTTACCGGCAAAGATGAGCCTCTGTTGATCTGGGGGA 41720 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || ||| |||| | |||| ||| || | |||||||| ||||| Sbjct 41721 ATTCCCTCCTTATC-TTGAATTTTCGCCTTAACGTTG-TCGATGGTGTCGGAGCTCTCCA 41778 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || || ||||| ||||| Sbjct 41779 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 41827 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||||| ||||||||| ||||| |||| | Sbjct 41862 GACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGTCCGTCCTCGAGCTGTTTTCCGGCA 41921 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | || || ||||| || || ||||| ||||| ||| | || | || | Sbjct 41922 AAGATGAGCCTTTGCTGATCCGGGGGAATCCCTTCCTTGTC-CTGAATCTTGGCCTTGAC 41980 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| ||||||||| | || | || || || || || || | Sbjct 41981 GTTG-TCGATGGTGTCGGAGCTCTCCACCTCAAGGGTAATGGTCTTTCCCGTAAGGGTCT 42039 Query 138599 TTACAAAAATCTGCATG 138615 | || || ||||||||| Sbjct 42040 TGACGAAGATCTGCATG 42056 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | ||||| |||||| ||||| || |||| Sbjct 29923 GATTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGTCCGTCCTCAAGTTGCTTGCCGGCG 29982 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | || ||||| || || || ||||||||||| ||| | || | |||| Sbjct 29983 AAGATGAGCCTTTGCTGGTCTGGGGGGATCCCTTCTTTGTC-CTGAATCTTGGCCTTTAC 30041 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||||| ||| ||||||| || | || || || || ||||| || Sbjct 30042 GTTATCAATGGTGTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCCGTAAGAGTCTT 30101 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 30102 GACAAAGATCTGCATG 30117 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||||| |||||||| ||||| |||| | Sbjct 42090 GACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCA 42149 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || ||||| || || || || || || |||||| || | Sbjct 42150 AAGATGAGCCTTTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATTTTGGCCTTGACG 42209 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| || | || || || || || || || Sbjct 42210 TTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTG 42269 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 42270 ACGAAGATCTGCATG 42284 >seq1470 Length=49555 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || || || | | | |||||| || |||||||||||| Sbjct 30842 CCACCTCTCAAACGTAGGACCAAGTGCAAGGTACTCTCCTTCTGGATGTTGTAGTCGGCA 30783 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || ||||| |||| | |||| || | ||| ||||| ||||| Sbjct 30782 AGGGTACGACCATCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 30723 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||||||| || | | || | |||||||| ||| ||| Sbjct 30722 ATTCCCTCCTTATCTTGGATTTTTGCCTTAACGTTATCAATGGTGTCGGAGCTCTCGACC 30663 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || || || || ||||| |||||||| Sbjct 30662 TCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 30616 >seq1646 Length=84127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||||||||| || |||||||| ||| | || || ||| ||||| |||||||||| Sbjct 61904 GACTCCTTTTGGATATTGTAGTCAGCT-AGGGTGCGGCCGTCTTCGAGCTGTTTACCGGC 61962 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| || | ||| ||||| || || ||||| |||||||| |||||| || | Sbjct 61963 AAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTCGCCTTGAC 62022 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | || || || | || | || || || || ||||| | Sbjct 62023 ATTG-TCAATGGTGTCAGAGCTTTCAACTTCCAAGGTAATGGTCTTTCCGGTGAGAGTCT 62081 Query 138599 TTACAAAAATCTGCAT 138614 ||||||| || ||||| Sbjct 62082 TTACAAAGATTTGCAT 62097 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| ||||||||||| || |||| Sbjct 61676 GACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGCCCATCCTCGAGTTGCTTTCCGGCG 61735 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| |||||||| || || || || || || ||| | || | || | Sbjct 61736 AAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTATC-TTGAATCTTCGCCTTGAC 61794 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||| ||||| | || | ||||| || || || || | Sbjct 61795 GTTG-TCAATAGTGTCGGAACTCTCAACCTCAAGGGTGATGGTTTTGCCGGTAAGGGTCT 61853 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 61854 TGACAAAGATCTGCAT 61869 >seq260 Length=279698 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAAT 138481 |||||| || |||||||| || ||| | ||||| ||||||||||| ||||||| Sbjct 162355 CTCCTTCTGGATGTTGTAATCAGCT-AGGGTACGGCCATCCTCGAGTTGCTTACCGGCGA 162413 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-- 138539 |||| || | ||| |||||||| || || || || || || ||| |||| | || | Sbjct 162414 AGATCAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTATC-TTGAATTTTGGCCTTGACG 162472 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||||||| | || | || || || ||||| || || Sbjct 162473 TTG-TCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGCGTCTT 162531 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 162532 GACGAAGATTTGCAT 162546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496208084080320