Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq187 100 2e-16 seq1470 93.3 3e-14 >seq187 Length=363338 Score = 100 bits (110), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| | ||| || | || || || |||||||| || || || ||||||||||| ||| Sbjct 22224 CCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 22283 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | |||| || | ||||| || ||| | || | | ||| ||||| || Sbjct 22284 -AGGGTACGYCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCTGGGGG 22342 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||||||||| ||| ||| || ||| | || || || || | |||| || Sbjct 22343 AATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAACTTTCAAC 22402 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || ||||| || ||||| |||||||| Sbjct 22403 CTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 22450 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | | || ||| || || |||||| || || || ||||||||||| ||| Sbjct 21996 CCACCACGGAGACGTAGAACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCT 22055 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | |||| || | ||||| || ||| | || | | ||| || || || Sbjct 22056 -AGGGTGCGGCCGTCCTCCAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGG 22114 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||| |||||||| ||||||| || || | ||||| || ||| | || || Sbjct 22115 AATTCCCTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCAAC 22174 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| ||||| || || |||| || || ||||| ||||||||| Sbjct 22175 CTCCAAGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATTTGCATA 22223 >seq1470 Length=49555 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||| || | || || || |||||||| || || || |||||||| ||| Sbjct 31298 CCACCCCTCAACCTGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 31239 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | |||| || | ||||| || || | ||||| | ||| ||||| ||| Sbjct 31238 AGRGTACGTCCGTCCTCAAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 31179 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || ||||| ||| | |||| || Sbjct 31178 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCAATAGTGTCGGAACTTTCGACC 31119 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || || ||||| || || || || |||||| Sbjct 31118 TCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTGACGAATATCTGCATA 31071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357353861359460