Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq187 125 6e-24 seq260 100 3e-16 seq1646 93.3 4e-14 seq1470 82.4 7e-11 seq139 82.4 7e-11 >seq187 Length=363338 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||||||||||||| || ||| | ||| | || || Sbjct 30364 ACCAGATGAAGGGTACTTTCCTTTTGGATATTGTAGTCGGCCAAGGTACGACCGTCCTCT 30423 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| ||| |||| | | ||||||||| || || ||||| |||||||| || Sbjct 30424 AGCTGTTTTCCAGCGAATATAAGCCTTTGCTGGTCTGGAGGTATGCCCTCTTTATCCTGG 30483 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| |||| || | || | |||||||||| |||||| |||||||| | || || Sbjct 30484 ATTTTTGCCTTGA-CGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTT 30542 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| || || || ||||| || |||||| Sbjct 30543 GCCGGTGAGTGTCTTCACAAAGATCTGCATC 30573 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| | || || ||||||||||| ||||| ||||||||| Sbjct 21765 ATACCACCGCGGAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAATCG 21824 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | ||||| | ||||| ||||| Sbjct 21825 GCAAGGGTACGTCCATCTTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGG 21884 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || |||| || | || | ||||| ||| ||| Sbjct 21885 GGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATTGTGTCAGAACTCTC 21943 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | ||| | ||| |||||||| || || || || || |||||||| Sbjct 21944 GACCTCCAAAGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 21994 >seq260 Length=279698 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 45149 TTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTA 45208 |||||| ||||| ||||| ||| | ||| | ||| || | |||||||| ||| | Sbjct 162583 TTCCTTCTGGATGTTATAGTCGGCAAGGGTACGACCATCCTCGAGCTGTTTTCCAGCGAA 162642 Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268 || | || ||||||||| || || || || ||||||||||| | |||||| | | || Sbjct 162643 GATGAGTCTTTGCTGGTCTGGAGGGATTCCCTCTTTATCTTGGA-TTTTTGCCTTAACGT 162701 Query 45269 T-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 | || | |||||| || |||||| || ||||| | || ||||| || || || || | Sbjct 162702 TGTCGATGGTGTCTGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTCA 162761 Query 45328 CAAAAATTTGCATC 45341 |||| || |||||| Sbjct 162762 CAAAGATCTGCATC 162775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 45150 TCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTA 45208 ||||| ||||| || ||||| ||| | ||| ||| || | ||| || || ||| | Sbjct 162356 TCCTTCTGGATGTTGTAATCAGCT-AGGGTACGGCCATCCTCGAGTTGCTTACCGGCGAA 162414 Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268 |||| | ||||||||||| ||||| || || |||||||||||||| |||| || Sbjct 162415 GATCAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTATCTTGAATTTTGGCCTTGA-CGT 162473 Query 45269 T-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 | || | ||||||||| ||| || || | || | || |||||||| || || || | Sbjct 162474 TGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGCGTCTTGA 162533 Query 45328 CAAAAATTTGCATC 45341 | || ||||||||| Sbjct 162534 CGAAGATTTGCATC 162547 >seq1646 Length=84127 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| ||||| || | ||| ||| || | ||| Sbjct 61439 TGGAGGGTCGATTCCTTTTGGATGTTATAGTCAGCAAGGGTACGCCCATCCTCAAGCTGT 61498 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| | |||||||| || ||||| || ||||| |||||||| || Sbjct 61499 TTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCTTTGTCTTGAATCTTG 61558 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||||||| ||| || || | || | ||| ||||||||| Sbjct 61559 GCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATCGTCTTGCCGGTT 61618 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || || || || || ||||||||| Sbjct 61619 AGCGTCTTGACGAAGATTTGCATC 61642 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | ||| ||||| ||| | || | | ||||||||||| |||||||| || || Sbjct 61714 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTT 61773 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||||| || |||| || | || | ||||||||| ||| || || || || | Sbjct 61774 ATCTTGAATCTTCGCCTTGA-CGTTGTCAATAGTGTCGGAACTCTCAACCTCAAGGGTGA 61832 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| || || || ||||| || ||||| Sbjct 61833 TGGTTTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 61869 >seq1470 Length=49555 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || || | ||| ||| || | ||| Sbjct 31046 TGGAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGCCCATCCTCAAGCTGT 30987 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| | ||||||||| || ||||| ||||| || || || || || Sbjct 30986 TTCCCGGCAAAGATCAACCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTG 30927 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||||||| ||||||||||| || | ||| || || || Sbjct 30926 GCCTTGA-CGTTGTCAATAGTGTCGGAACTTTCGACTTCGAGGGTGATCGTCTTTCCAGT 30868 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 30867 GAGGGTCTTCACGAAGATTTGCAT 30844 >seq139 Length=432677 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGT 45189 ||| ||||| || ||||||||||| || || || || || ||| | |||| ||| | Sbjct 178577 CACCAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGCT-AGGGTTCGGCCATCCT 178635 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || ||||| || | || | | ||||| || | ||| ||||| ||||| |||| Sbjct 178636 CGAGCTGCTTTCCAGCAAAGATTAGCCTCTGCTGATCTGTCGGGATGCCCTCTTTGTCTT 178695 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | ||||| ||||| ||| || || || | | || || ||||| || | || | Sbjct 178696 GTATTTTGGATTTGACACTTTCGACAGTATCAGGACTTTCCACATCGAGGGTTATAGTCT 178755 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || ||||| ||||| || |||||| Sbjct 178756 TTCCGGTAAGGGTTTTGACAAATATCTGCATC 178787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451953728249760