Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq194 233 2e-56 seq407 114 2e-20 seq116 98.7 1e-15 seq471 93.3 5e-14 seq39 84.2 3e-11 >seq194 Length=269275 Score = 233 bits (258), Expect = 2e-56 Identities = 248/326 (76%), Gaps = 1/326 (0%) Strand=Plus/Minus Query 6477 TCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGA 6536 |||| | ||| | || || ||||| | |||||||||||||| |||||| ||||| | Sbjct 237242 TCCATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTAGAAA 237183 Query 6537 AGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCT 6596 | || | |||||||| || ||||| || || ||||| || ||||| ||||| || || | Sbjct 237182 AAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTT 237123 Query 6597 CTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAG 6656 | |||| || || | ||| || ||| ||||||| |||||||||||||| |||| Sbjct 237122 CGGCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAG 237063 Query 6657 TATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTA 6716 |||| || ||||||||||| ||||||||||| ||||| || | ||||| | ||| || | Sbjct 237062 TATTTTCGACAGTAGCACCATGAATAGCACATAGCAAAGCCGCCCCTAATACACCGGCAA 237003 Query 6717 CACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGA 6776 | |||||||||||||| ||||| | |||||| || || || || || | ||||| | || Sbjct 237002 CTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGAAAAAAGAGGATGA 236943 Query 6777 AGCGGAATATCGC-TGCAACACCAAA 6801 | || ||||| || ||| |||||||| Sbjct 236942 ATCGAAATATAGCTTGCTACACCAAA 236917 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 6810 CAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAA 6869 |||| ||||||| ||||| | || ||||| || | || |||| ||||| | ||||| Sbjct 237848 CAAAAAACCAACCCGACTGACTTAGTGGATAAATCAAGAATGCAGAAACAAAAATAGCAA 237907 Query 6870 TGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCA 6928 | || ||||| || | |||||||| || ||||| | | || ||| || || | ||| Sbjct 237908 TTGGGCCAGAGAATGTAATTGCATTATAAGGACGTA-ATTGAACAGATCGAGCAAGTTCA 237966 Query 6929 AACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCAT 6988 || || || | |||||||||||| || |||| || |||||||| || ||||||| ||| Sbjct 237967 AATTGACGTAACATGAAACCTATTAGTCCAAAAGCACCGTGGAGAGCAACAAAAGTCCAC 238026 Query 6989 AGTCCCCC 6996 || || || Sbjct 238027 AGACCACC 238034 >seq407 Length=272206 Score = 114 bits (126), Expect = 2e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6605 GTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCT 6664 || || | ||| || ||| ||||||| |||||||||||||| |||||||| || Sbjct 62072 GTMGGGTTAAAAGCACGGAATGTATTTGTACCATCACCATCTTCAAATAAAGTATTTTCG 62013 Query 6665 ACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATC 6724 | | ||||||| | ||||||||||||||| || | ||||| | ||| || || |||||| Sbjct 62012 AGAATAGCACCATYAATAGCACAGAGCAAAGCCGCCCCTAATACACCGGCAACTCCCATC 61953 Query 6725 ATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAG 6771 |||||||| | || | |||||| || || || || || | ||||| Sbjct 61952 ATATGAAATAGTTTCAACGTCCAATTATGAAATCCTTGAAAAAAGAG 61906 >seq116 Length=395782 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 8130 ATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCA 8189 |||| ||| ||||| || ||||||| | |||| || |||||||||||||||||||| Sbjct 22920 ATGCAACAGCAATCCAAGGTTGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCA 22861 Query 8190 TGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGT 8249 |||| | | ||| | | |||||| | | || |||| |||||||||| |||| Sbjct 22860 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCACAAGGACCACCATTGT 22801 Query 8250 AGAGCCACTCATCAA--GA--GAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATA 8305 | ||| ||||||| || || | |||||||| || || || ||||| | ||||||| Sbjct 22800 GTAACCATTCATCAACGGACGGACGTAGCTTCCCATATTGGGTAAAAGTGCAAACCAATA 22741 Query 8306 GC 8307 || Sbjct 22740 GC 22739 >seq471 Length=100806 Score = 93.3 bits (102), Expect = 5e-14 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 6872 GGACCAGAAAACGCGATTGCATTGTAGGGACG-AATACCGACTAGA-CGTGCGATCTCAA 6929 || ||||| || || || ||||| || ||||| ||| | || ||| || || | |||| Sbjct 70458 GGGCCAGAGAATGCAATCGCATTATAAGGACGTAATTAC-AC-AGATCGAGCAAGTTCAA 70401 Query 6930 ACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATA 6989 | || | | |||||||||||| || | || || |||||||| || ||||||| ||| | Sbjct 70400 ATTGACATAACATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAAAGTCCACA 70341 Query 6990 GTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAA 7049 | || || | ||| ||| || |||||||| || |||| |||||||| || | | Sbjct 70340 GACCACCCAATTGACACCAACGAGTAAAATCTCCTTGTGCTTTAGGACCCCAGAGTAACA 70281 Query 7050 GTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATC 7109 | |||||| | | | | |||||| | || || ||||| || | ||||| || | Sbjct 70280 ACAAAGAATGTGCTAAACTATTAGCAGGCATAGAAACTGCAGCCGTTAAAAAATTGCAGC 70221 Query 7110 CCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCA 7146 || | | ||| ||| || | || ||| | ||||| Sbjct 70220 CCACCAAATAGGAACTGGCCAATCCATGAATATACCA 70184 >seq39 Length=774562 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 10199 GCCATCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTC-GTGGGATAA 10257 ||| ||| ||||| || ||||||| | | | || ||||| || ||| || || ||| Sbjct 756394 GCCCTCAATAAAGATCGCTTTCTTTGTGAGTGTGAATAACACAGTC-CTCAGTCGGGTAA 756336 Query 10258 GAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCG 10317 |||||||| || || | ||||| | || ||||| |||| || || || || |||| Sbjct 756335 GAAACACAAGTGAGTACATAACCATCGTCCATCTGTCCATCRTCTAGAAAAGACCCATCG 756276 Query 10318 CTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGG 10377 || || || ||||| || || || ||||| | || || ||||| || | | Sbjct 756275 GACTGGTCCACAGTACCTTTTTCCAGCTTCCCAGCACAGGTTGAGCAAGCACCTGCCCTG 756216 Query 10378 CACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTC 10436 || |||||| ||||| || || || | |||||| | |||| ||||||| ||| || Sbjct 756215 CAAGAGTAGGGAAGGTCGATTCCAGCGTTTTCAGCCGAGTCCAAAATGTACACATCATC 756157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622056708440640