Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1083 98.7 7e-16 seq771 95.1 8e-15 seq187 93.3 3e-14 seq1646 89.7 4e-13 >seq1083 Length=90715 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| ||||| || || | ||| | ||| || || ||||| || || ||||| Sbjct 36349 CCGCCTCTTAAACGGAGCACGAGATGTAGAGTAGACTCCTTCTGTATGTTGTAGTCGGCT 36408 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | |||||| || |||| || | | |||||||| | || Sbjct 36409 AAAGTGCGACCATCCTCGAGTTGTTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGCGGG 36468 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| |||||| ||| | ||| | | | |||||| | || |||||| Sbjct 36469 ATGCACTCTTTGTCCTGTATTTTCGATTTCA-CGTTGTCGATTGTGTCGGAGCCTTCCAC 36527 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || |||| ||||| || ||||||||||| Sbjct 36528 CTCGAGGGTGATGGTTTTTCCGGTTAGGGTTTTCACAAAGATCTGCAT 36575 >seq771 Length=161796 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || ||||| ||||| || || || || || || || |||||||| Sbjct 43496 CCGCCACGGAGACGTAGAACCAAGTGCAAGGTACTCTCCTTCTGGATGTTGTAATCGGCT 43437 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||||||||| |||| || || | |||||| || ||||| Sbjct 43436 ACGGTACGCCCATCCTCAAGCTGTTTCCCGGCAAATATCAACCTCTGCTGGTCTGAGGGA 43377 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| || | || | | ||||| | || || || Sbjct 43376 ATTCCCTCTTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTGTCGGAACTCTCGACT 43317 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| | || || || || | || || |||||||||||||| Sbjct 43316 TCCAAAGTTACGGTCTTTCCTGTGAGGGTATTCACGAAGATCTGCAT 43270 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || ||||||||||||||| | ||| ||||| |||||||| |||| Sbjct 43688 TCTTTCTGGATGTTATAATCGGCCAAAGTCCTCCCATATTCCAACTGTTTCCCAGCAAAG 43629 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | |||||| || | ||| | ||||| ||||| || || || || | Sbjct 43628 ATCAACCTCTGCTGGTCAGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGATGTTA 43569 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || |||||||| || || || || || | || || ||| Sbjct 43568 TCAATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGGTCTTCCCTGTGAGGGTCTTGACG 43509 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 43508 AATATCTGCAT 43498 >seq187 Length=363338 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| |||||| || ||||| || || || ||||| || || ||||| || || || Sbjct 22451 GCCACCTCTCAAACGTAGGACCAAGTGTAAGGTACTTTCCTTCTGGATATTGTAGTCAGC 22510 Query 39552 CAAAACGCGTTC-ATCGTCC---AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||| | | ||||| | ||||| ||| |||| || | | ||||||||||| Sbjct 22511 TA----GCGTACGACCGTCCTCGAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGATCCG 22566 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | ||||| ||||| || || ||||| | ||| ||||| | ||| | Sbjct 22567 GGGGAATCCCTTCCTTGTCCTGAATCTTGGCTTTAACATTGTCTATGGTGTCGGAGCTCT 22626 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| || || || || || || | || || || || |||||||| Sbjct 22627 CCACCTCCAAGGTGATGGTCTTTCCAGTAAGCGTCTTGACAAATATCTGCAT 22678 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | || ||| || || || ||||| || || Sbjct 41373 CCACCACGGAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAGTCAGCA 41432 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||||||||| |||| || || | ||||||||||| ||| Sbjct 41433 AGGGTACGCCCATCCTCGAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGA 41492 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || || | ||| | ||| ||||| | ||| ||||| Sbjct 41493 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCTATGGTGTCCGAGCTCTCCAC 41551 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || | ||| || |||||||||||||| Sbjct 41552 CTCCAAGGTTATGGTCTTTCCAGTGAGAGTCTTCACGAAGATCTGCAT 41599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | || ||| || || || ||||||||||| Sbjct 21768 CCACCGCGGAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAATCGGCA 21827 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | || |||||| |||| || || | ||||||||||| ||| Sbjct 21828 AGGGTACGTCCATCTTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGA 21887 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || || | ||| | | | |||||| | || || || Sbjct 21888 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATTGTGTCAGAACTCTCGAC 21946 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || | || || |||||||| ||||| Sbjct 21947 CTCCAAAGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 21994 >seq1646 Length=84127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | || | |||| ||||| || || |||||||||||| Sbjct 61187 CCACCACGAAGACGGAGGACAAGGTGAAGAGTGGACTCTTTCTGGATGTTATAATCGGCC 61246 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| ||||| || || || |||| || || | |||||| || | ||| Sbjct 61247 AAAGTCCTCCCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 61306 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| | | |||||| | | ||| | | | || || | ||| ||||| Sbjct 61307 ATGCCCTCCTTGTC-CTGAATTTTTGCCTTAACGTTGTCAATGGTATCCGAGCTCTCCAC 61365 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || | || || ||||| |||||||| Sbjct 61366 CTCCAATGTGATGGTCTTCCCAGTAAGGGTCTTGACGAATATCTGCAT 61413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347332530887348