Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1305 96.9 4e-15 seq524 91.5 2e-13 >seq1305 Length=68372 Score = 96.9 bits (106), Expect = 4e-15 Identities = 231/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| ||||||| ||||| ||||| || | || ||| || | |||||| Sbjct 45395 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAACGCCTGTGTTTCCTTCGAAA 45454 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA 11655 ||||||||||| || | || ||||| | |||||||| | |||||| || | | Sbjct 45455 CCGTCCATTTCAGTTAAGAGTTGGTTAAGAGTCTGTTCTCTCTCATCATT--TCCTCCTC 45512 Query 11656 CCA--CCTGCCGAACGCT-TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACAC 11712 | | || | || | |||| || ||||| || || ||||| | ||||| ||||| Sbjct 45513 CAATTCCAGTTCCTCGTTGTCTT-CCAACAGCATCGATTTCATCAACAAATACAATACAT 45571 Query 11713 GGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACG 11772 || || | ||| | || ||||| ||||| || || || || ||||| || Sbjct 45572 GGAGCATTCTCCTTTGCTTTTTTAAAAAGGTCACGAACTCGAGAAGCACCGACACCAACA 45631 Query 11773 AACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGC 11831 ||||||||||| || | | |||| | | ||| || |||||| || |||||||| Sbjct 45632 AACATCTCAACAAACTCCGAACCAGAGATAGAGAA-AAAAGGAACACCAGCTTCACCAGC 45690 Query 11832 GATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 || || || | ||||||||| || || || || | ||| Sbjct 45691 AATCGCCTTTGCCAAGAGAGTCTTTCCGGTTCCTGGGGGACC 45732 >seq524 Length=308948 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 || ||||| ||||| ||||| ||||| |||||||||||||| || || ||||| || ||| Sbjct 106120 AGACCTCTCTTCTTGAGCCAGAAGATAGCACAAAAACTTCCCGAGAAAAAGATTCCTTCC 106179 Query 119622 ACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAG 119680 ||||| || ||||| | | | ||||||||||| || || | || |||| | | Sbjct 106180 ACACACGCAAAAGCAACAATCCTCTCAGCAAAAGACTCCCCAC-CATTGATCCACCTCAT 106238 Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGA 119712 ||||| |||||||| ||| | ||||||| Sbjct 106239 TGCCCATTTGGCCTTCTTCTCAACACAGGGGA 106270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588911536576800