Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq132 143 3e-29 seq1305 122 1e-22 seq1254 114 2e-20 >seq132 Length=337084 Score = 143 bits (158), Expect = 3e-29 Identities = 238/337 (71%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| ||||| | ||||| || || || || |||| ||||| |||||| || ||| Sbjct 93201 TCAAGAATATCTGCACGATTAGTTGCTGCAATTACAATGATACCGGTGTTTCCTT--CAA 93258 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||| ||||| || |||||||||||||||| || || |||| |||||| || || | Sbjct 93259 AACCGTCCATTTCAGTCAAAAGTTGGTTAAGTGTCTGCTCCCTTTCATCGTTTCCT--CC 93316 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | | | | || || || ||||| || |||| || |||||||| Sbjct 93317 TCCAATCCCAGTTCCTCTTGACCTCCCAACAGCGTCAATTTCGTCAACAAACACAATACA 93376 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 |||| || || || ||| ||| ||||| ||||| || || || |||||||| Sbjct 93377 TGGTGCGTTCTCCTTAGCCTTTTTAAAAAGATCACGAACTCTAGAAGCACCAACACCAAC 93436 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | || | ||| || | || ||| || ||| || ||| || | Sbjct 93437 AAACATCTCAACAAACTCTGAACCAGAA-ATGGAGAAGAACGGCACACCAGCTTCTCCTG 93495 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || || | ||||||||| || || ||||| Sbjct 93496 CAATTGCCTTTGCCAAAAGAGTCTTCCCAGTTCCTGG 93532 >seq1305 Length=68372 Score = 122 bits (134), Expect = 1e-22 Identities = 233/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAA 9282 ||||| ||||| | || || || || || || |||| || ||||| ||| || | | Sbjct 45395 TCAAGAATATCTGCACGGTTAGTAGCTGCAATTACAATAACGCCTGTGTTTCCTT--CGA 45452 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||| ||||| || || || |||||||||| ||| ||||| | |||||||| || | Sbjct 45453 AACCGTCCATTTCAGTTAAGAGTTGGTTAAGAGTCTGTTCTCTCTCATCATTTCCT--CC 45510 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | ||||| |||| || ||||| || ||||||| || |||||||| Sbjct 45511 TCCAATTCCAGTTCCTCGTTGTCTTCCAACAGCATCGATTTCATCAACAAATACAATACA 45570 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| ||| || || ||| ||| || || ||||| | || || |||||||| Sbjct 45571 TGGAGCATTCTCCTTTGCTTTTTTAAAAAGGTCACGAACTCGAGAAGCACCGACACCAAC 45630 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || || || ||| || |||||| | Sbjct 45631 AAACATCTCAACAAACTCCGAACCAG-AGATAGAGAAAAAAGGAACACCAGCTTCACCAG 45689 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || || | |||||||| || || ||||| Sbjct 45690 CAATCGCCTTTGCCAAGAGAGTCTTTCCGGTTCCTGG 45726 >seq1254 Length=70693 Score = 114 bits (126), Expect = 2e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || || || ||||| |||||||||||||| || |||| ||||||| ||||| |||| || Sbjct 36365 TGAGGCCTAGGTGTCCCAGCATTGAAGAGAGTCGGTGATGCGTGAGTGAACC-ACCTCTG 36307 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | ||| || | |||||||||||||| || || || || || | || Sbjct 36306 GGACATGAGATGGTACGTTTTTAAGACAGAATCAATATCCTCTTTATGTATCCCAACAGC 36247 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||||| ||| ||| | |||| | | || | || || || | Sbjct 36246 AACTCTCATCAACATGTGTTGTGGTCTCTCCACAACCTTTCCTTGGA--TTTTCAACAAG 36189 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | ||||||||||||||| ||||||||| || ||||| ||||||| Sbjct 36188 TAAGACCTCTCAAGGGTTTTGAAACCAAAGTAGTCATAATCAAAGTCCCG 36139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589916226601440