Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq194 201 1e-46 seq471 116 5e-21 seq1610 93.3 5e-14 seq455 91.5 2e-13 seq60 91.5 2e-13 seq50 89.7 6e-13 seq1089 87.8 2e-12 seq932 87.8 2e-12 seq386 87.8 2e-12 seq32 86.0 8e-12 seq116 84.2 3e-11 seq160 82.4 9e-11 >seq194 Length=269275 Score = 201 bits (222), Expect = 1e-46 Identities = 249/338 (74%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 181892 CCGAGTTTCGGTGTCGCG-GCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAA 181950 || || || ||||| || || || || || ||| | ||||| | || || |||||||| Sbjct 236911 CCTAGCTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAA 236970 Query 181951 TTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACT 182010 ||||||| | || || || ||||||||||| ||||| ||| | | || | || || || Sbjct 236971 TTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCT 237030 Query 182011 CTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAA 182070 | ||| ||||| |||| || || || |||||| | | | |||| ||||| ||||| Sbjct 237031 ATGTGCTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAA 237090 Query 182071 TACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAA 182130 ||| ||| || || | ||||||||| |||||||| |||||||||||||| || || Sbjct 237091 TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAA 237150 Query 182131 CCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTT 182190 |||||| ||||| || ||||| || |||| ||| ||||| | ||||| |||||||| Sbjct 237151 CCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTT 237210 Query 182191 TATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTT 182228 |||| | ||||| || || | ||| | |||| ||||| Sbjct 237211 TATGTTATTTGTACCAGTAACCGGTTTATGGA-AAGTT 237247 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 181703 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTC 181762 || || || ||| ||||||| || |||||||| || || | || || ||||| ||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 181763 AGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTC 181821 | ||||||||||||||||| ||| || | | || || || ||||| ||| | || || Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTGTTC-AATTACGTCCTTATAATGCAATTACATTCTC 237916 Query 181822 CGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTG 181881 || || |||||| | || || |||| ||| | || ||||| || | || || |||| Sbjct 237915 TGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAGTCAGTCGGGTTG 237856 Query 181882 GTTCTTTG 181889 ||| |||| Sbjct 237855 GTTTTTTG 237848 >seq471 Length=100806 Score = 116 bits (128), Expect = 5e-21 Identities = 197/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 181550 TCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCTTACAGC 181608 || ||||| | || |||||||| |||||| | | ||| ||| ||||| | || || Sbjct 70181 TCATGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGC 70239 Query 181609 GGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 181668 || || || | ||||||| | | | | |||||| | | |||| ||||||||| | Sbjct 70240 TGCAGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAA 70299 Query 181669 AGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCT 181728 ||| || || ||||| || ||| ||| | || || || ||| ||||||| || || Sbjct 70300 AGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCT 70359 Query 181729 CCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAA 181787 |||||| || |||| || || ||||| ||| | | ||||||||||||||||| ||| Sbjct 70360 CCACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCT-G 70418 Query 181788 TCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCC 181827 | | | || || || ||||||||||| || || || || Sbjct 70419 TGTAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq1610 Length=34327 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 ||||||||||||||| |||||||| || ||||||| || ||||||||||||||||||| Sbjct 16979 TCCTCAGTAGCTCAGTGGCAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 17038 Query 141315 CTACCTGGGGA 141325 |||| |||||| Sbjct 17039 CTACTTGGGGA 17049 >seq455 Length=14957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 2206 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 2265 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 2266 CCTACTTGGGGAG 2278 >seq60 Length=520799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 182243 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAA 182302 || || |||| ||| | |||||||||||||| || | || |||| | ||| ||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 182303 GACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCA 182362 || || || || ||||| |||||||| || || |||||||| || || ||| | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 182363 TGG 182365 ||| Sbjct 267456 TGG 267454 >seq50 Length=863891 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 506950 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 507009 Query 141314 CCTACCTGGGGA 141325 ||||| |||||| Sbjct 507010 CCTACTTGGGGA 507021 >seq1089 Length=80483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 ||||||||||||||| || ||||| || ||||||| || ||||||||||||||||||| Sbjct 28795 TCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 28736 Query 141315 CTACCTGGGGA 141325 |||| |||||| Sbjct 28735 CTACTTGGGGA 28725 >seq932 Length=92798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 ||||||||||||||| || ||||| || ||||||| || ||||||||||||||||||| Sbjct 62327 TCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 62268 Query 141315 CTACCTGGGGA 141325 |||| |||||| Sbjct 62267 CTACTTGGGGA 62257 >seq386 Length=98747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141253 ATTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAA 141312 ||||||||||||||||| || |||||| |||||||||| | ||||| |||||||||| Sbjct 18183 ATTCCTCAGTAGCTCAGTGGTTGAGCCGTCGACTGTTAACTGACTGGTTGTAGGTTCAAT 18242 Query 141313 TCCTACCTGGGGA 141325 |||||| |||||| Sbjct 18243 TCCTACTTGGGGA 18255 >seq32 Length=728288 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | || ||||||||||||||| Sbjct 728174 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTAGTCGTAGGTTCAAAT 728115 Query 141314 CCTACCTGGGGA 141325 ||||| |||||| Sbjct 728114 CCTACTTGGGGA 728103 >seq116 Length=395782 Score = 84.2 bits (92), Expect = 3e-11 Identities = 131/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 179961 GCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC--CG--CATCGCTTGACGAGTGGCT 180016 || |||||| | ||||| || || || |||||||| || | || |||| || ||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 180017 GTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTA 180076 | || |||||||||| |||| | || | |||||| | |||| | | || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 180077 CATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAG 180135 |||||||||||||||||||||| || || |||||||||| || ||||| ||| || | Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGAT-TGCTGTTG 22917 Query 180136 CAT 180138 ||| Sbjct 22918 CAT 22920 >seq160 Length=213652 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 ||||||||||||| | || ||||| | || ||||| | ||||||||||||||||||| Sbjct 1008 TCCTCAGTAGCTCTGTGGTAGAGCAGTCGGTTGTTAGCTGACTGGTCGTAGGTTCAAATC 1067 Query 141315 CTACCTGGGGAGTCATGCTTGCTTA 141339 ||||||||||| | | |||||||| Sbjct 1068 CTACCTGGGGA-TAGTTCTTGCTTA 1091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610329992070240