Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq194 127 2e-24 seq471 84.2 3e-11 >seq194 Length=269275 Score = 127 bits (140), Expect = 2e-24 Identities = 235/347 (68%), Gaps = 22/347 (6%) Strand=Plus/Plus Query 171003 TTCGGTGTCGCA-GCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 171061 || ||||| ||| || || ||||| | ||| | || | ||||| || || || || Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 171062 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGC 171121 ||||| |||||||| |||||||| ||||| || || |||| | || || ||||||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 171122 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAA 171181 ||||||||||| || || | || || || | |||||| | | || || || Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGAT------GGTGATGGTGCAAA 237090 Query 171182 TAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAG 171241 || |||||||||| ||| | || || || | ||||||||||| Sbjct 237091 TA---------------CATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTC 237135 Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||| |||| || ||| | || ||||| || || ||||| ||||||| ||||| ||| | Sbjct 237136 AATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACG 237195 Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGA 171348 | ||||| ||| ||||||| || || || || | ||| | |||| Sbjct 237196 TTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGA 237242 >seq471 Length=100806 Score = 84.2 bits (92), Expect = 3e-11 Identities = 185/275 (67%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 170655 TCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCA 170714 |||||||||| ||||| | || || ||| | | ||| || || || |||| || Sbjct 70181 TCATGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTTTAACGGCT 70240 Query 170715 GCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAA 170774 |||||||| | |||| | | | ||| | | |||| || ||||| ||| || Sbjct 70241 GCAGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAA 70300 Query 170775 GCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTA 170834 |||||||| ||| |||||||| ||| | || ||| | |||| ||||| || | Sbjct 70301 GCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTC 70360 Query 170835 CATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTA 170894 || || | || ||||| |||||||||||| | | |||||||| | || || ||| Sbjct 70361 CACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGT- 70419 Query 170895 GGCATCA-GACCTTACAACGCACTCGCATTCTCTG 170928 | || | | ||||| || || | |||||||||| Sbjct 70420 GTAATTACGTCCTTATAATGCGATTGCATTCTCTG 70454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579149405159040