Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq194 194 2e-44 seq471 132 6e-26 seq60 102 9e-17 >seq194 Length=269275 Score = 194 bits (214), Expect = 2e-44 Identities = 240/327 (73%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 169780 CTTTGGAGTATCA-GCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGA 169838 |||||| ||| || || || || | ||| | | || | |||||||| || || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 169839 CGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTG 169898 ||||||| ||||| || |||||||| || || || | || || | || ||||| | || Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 169899 CTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTT 169958 |||| ||||||| ||| || || || || || | |||||| ||||| |||||||| | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 169959 TCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 170018 || || ||| | | || || | ||||| |||||||| ||||| || || ||||||| Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 170019 TCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGT 170078 | ||||| || ||||| || |||| |||||||| || |||||| | ||||| || |||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 170079 TGTTTGTGCCTGTTATGGGTCTTTGGA 170105 | ||||| || || | ||| | |||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 122 bits (134), Expect = 1e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 169570 TCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATT 169629 ||| |||||||||| ||||||||| |||| ||||| || || || ||||| |||| | | Sbjct 238050 TCGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACT 237991 Query 169630 GATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAA 169689 || ||||||||| | | || |||||| | || || | || | ||||||||||| Sbjct 237990 AATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTACGTCCTTATAA 237931 Query 169690 TGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTT-ATCTACCCAC 169748 ||| ||| |||||||||| || |||||| | ||||| || | ||||| || || |||| Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTG-CATTCTTGATTTATCCAC 237872 Query 169749 TTGGACAGTCCTCATGGTTCTTTG 169772 | | ||||| ||||| |||| Sbjct 237871 TAAGTCAGTCGGGTTGGTTTTTTG 237848 >seq471 Length=100806 Score = 132 bits (146), Expect = 6e-26 Identities = 146/191 (76%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 169522 ACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCA 169581 ||| || || | || || |||||||| |||||||||| ||||| ||| |||||||| Sbjct 70270 ACATTCTTTGTTGTTACTCTGGGGTCCTAAAGCACAAGGAGATTTTACTCGTTGGTGTCA 70329 Query 169582 ATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCAT 169641 |||||||||||| |||| ||||| || || || ||||| || | | | || |||||||| Sbjct 70330 ATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCAT 70389 Query 169642 GCTTAGGCAGTTTGAATTGGCACG-TCTTATTGGCA-TCCGTCCTTATAATGCTATTGCA 169699 | | | || |||||| | || || ||| || | | |||||||||||||| |||||| Sbjct 70390 GTTATGTCAATTTGAACTTGCTCGATCT--GTGTAATTACGTCCTTATAATGCGATTGCA 70447 Query 169700 TTCTCTGGTCC 169710 |||||||| || Sbjct 70448 TTCTCTGGCCC 70458 >seq60 Length=520799 Score = 102 bits (112), Expect = 9e-17 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 170126 GGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 170185 ||||| |||| || | |||||||| || ||||| |||| | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 170186 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCA 170245 ||||| ||||||||||| |||||||||||||| || || || || || || ||||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 170246 TGG 170248 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574410723864480