Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq194 226 3e-54 seq471 147 2e-30 seq116 113 5e-20 seq407 105 7e-18 seq60 104 3e-17 >seq194 Length=269275 Score = 226 bits (250), Expect = 3e-54 Identities = 243/320 (76%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 165679 AGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTT 165738 ||| || || | ||| | ||||| | |||||||| ||||| ||||| ||||| || || Sbjct 236929 AGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATT 236988 Query 165739 TCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGT 165798 |||||||||||| ||||| ||| | | || | || ||||| | ||| || ||||||| Sbjct 236989 TCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGC 237048 Query 165799 TACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGA 165858 ||| || || |||||| | | | |||||||||| | ||||||||| ||| || ||| | Sbjct 237049 TACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 237108 Query 165859 CTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGAT 165918 | | ||||||| |||||||| || ||||||||||| || ||||| || ||||| || || Sbjct 237109 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAAT 237168 Query 165919 CTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 165978 ||| || |||| ||| |||||| | ||||| |||||||||||| | ||||| || || Sbjct 237169 CTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 237228 Query 165979 TATGGGTCTTTGGACAAGTT 165998 | ||| | |||| ||||| Sbjct 237229 AACCGGTTTATGGA-AAGTT 237247 >seq471 Length=100806 Score = 147 bits (162), Expect = 2e-30 Identities = 203/278 (73%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 165323 TGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGC 165381 ||||||| ||| || ||||| ||||||||| ||| ||| ||||| ||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242 Query 165382 AGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGC 165441 |||||||| || || | | | | |||||| | || | |||||||||||| | || Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 165442 TCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 165501 ||||| ||||| | ||| ||| | || || || ||| ||||||| || ||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 165502 CGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACGTCTCATCGG 165561 ||| ||||||| ||||| ||||||||| | |||| |||||| | || || || | | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCG-ATC-TGTG 70420 Query 165562 TA--TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 165597 || | ||||| || ||||| ||||| |||||||| || Sbjct 70421 TAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq116 Length=395782 Score = 113 bits (124), Expect = 5e-20 Identities = 134/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 163998 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGC--CG--CATCCCTTGATGAATGGCT 164053 || |||||| | ||||| ||||| || |||||||| || | ||| ||||||||||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 164054 TTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATA 164113 |||| |||||||||| |||| | || | |||||| | | ||| | | || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 164114 CATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGC 164173 ||||||||||||||||||||| || |||| | ||||||| ||||||||| |||||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 >seq407 Length=272206 Score = 105 bits (116), Expect = 7e-18 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 165698 CTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCA 165757 ||||| | |||||||| ||||| ||||| ||||| | |||||||||||||| ||||| Sbjct 61906 CTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCC 61965 Query 165758 GGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTG 165817 ||| | | || | || ||||| | ||| || |||||| || | || |||||| | Sbjct 61966 GGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTA 62025 Query 165818 TATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAG 165869 | | |||||||||| | | ||||||| ||| || ||| || | |||| || Sbjct 62026 TTTGAAGATGGTGATGGTACAAATACATTCCGTGCTTTTAACCCKACTCGAG 62077 >seq60 Length=520799 Score = 104 bits (114), Expect = 3e-17 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 166013 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 166072 || || |||| ||| | |||||||||||||| || | || | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 166073 GACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCT 166132 || || || ||||| || |||||||| ||||| |||||||| || || ||| |||||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 166133 TGG 166135 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556863844580640