Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq194 114 2e-20 >seq194 Length=269275 Score = 114 bits (126), Expect = 2e-20 Identities = 232/347 (67%), Gaps = 22/347 (6%) Strand=Plus/Plus Query 173425 TTCGGTGTCGCA-GCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 173483 || ||||| ||| || || ||||| | ||| | || | ||||| || || || || Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 173484 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGC 173543 ||||| |||||||| |||||||| ||||| || || |||| | || || |||||||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 173544 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGG 173603 ||||||||||| || || | || || || | ||||| || ||| || Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAG------------ATGGTGATGG 237084 Query 173604 TAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAG 173663 | | | || ||| | || ||| | || || || | |||||||||||| Sbjct 237085 T---------GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTC 237135 Query 173664 TATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAG 173723 ||| |||| || ||| | || ||||| || || ||||| | || ||||| || ||| | Sbjct 237136 AATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACG 237195 Query 173724 ATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGA 173770 | ||||| ||| | ||||| || ||||| || | ||| | |||| Sbjct 237196 TTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGA 237242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587986837796160