Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq194 233 2e-56 seq471 141 1e-28 seq407 105 7e-18 seq60 84.2 2e-11 >seq194 Length=269275 Score = 233 bits (258), Expect = 2e-56 Identities = 248/326 (76%), Gaps = 1/326 (0%) Strand=Plus/Plus Query 164095 TTTGGAGTGGCA-GCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGAC 164153 ||||| || ||| || || || ||||| || | || |||||||||||||||| ||||| Sbjct 236917 TTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 236976 Query 164154 TTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGC 164213 |||||||| || ||||||||||||||||| ||| || |||| | || ||||||| ||| Sbjct 236977 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGC 237036 Query 164214 TATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTT 164273 |||||| || | || || |||||||| || | ||||||||| || ||||| || || Sbjct 237037 TATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 237096 Query 164274 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 164333 || ||| | | || || | ||||| |||||||| ||||| || || |||||||| Sbjct 237097 CCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTT 237156 Query 164334 CTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 164393 ||||| || ||||| || ||||| |||||||| || || ||| | ||||| || ||||| Sbjct 237157 TTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 237216 Query 164394 GTTTGTGCCTGTTATGGGTCTATGGA 164419 ||||| || || | ||| |||||| Sbjct 237217 ATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 104 bits (114), Expect = 3e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 163900 GGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT 163959 || || || |||| |||||| || |||||||| || |||| || || ||||||||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 163960 CGGCAATTTGAACTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTC 164018 || ||||||||||||||||| ||| || | | | || || ||||| ||| | ||||| Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTG-TTCAATTACGTCCTTATAATGCAATTACATTCTC 237916 Query 164019 TGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTG 164078 ||| || |||||| | || ||| || || | || || || || |||| || |||| Sbjct 237915 TGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAGTCAGTCGGGTTG 237856 Query 164079 GTTCTT 164084 ||| || Sbjct 237855 GTTTTT 237850 >seq471 Length=100806 Score = 141 bits (156), Expect = 1e-28 Identities = 206/282 (73%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 163747 TCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCTCACAGC 163805 || ||||| | |||||| |||| | ||||||| | | ||| ||| |||||| | || || Sbjct 70181 TCATGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGC 70239 Query 163806 GGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTG 163864 || || || | ||||||| | | | | |||||| || || || |||||||||||| Sbjct 70240 TGCAGTTTCTATGCCTGCTAATAGTTTAGCACATTCT-TTGTTGTTACTCTGGGGTCCTA 70298 Query 163865 AGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCAC 163924 | || || || ||||| || ||| ||| | || || || |||| |||||| || | Sbjct 70299 AAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTC 70358 Query 163925 TCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG-CCTG 163983 ||||||| || || | || || ||||||||| | | ||||||||||||||||| ||| Sbjct 70359 TCCACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTG 70418 Query 163984 ATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCC 164024 || ||| | | || || ||||||||||| |||||||| || Sbjct 70419 --TGTAATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq407 Length=272206 Score = 105 bits (116), Expect = 7e-18 Identities = 107/139 (77%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 164120 TCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAG 164179 ||||||| || ||||||||||||||| ||||| ||||| | || ||||||||||||| Sbjct 61904 TCCTCTTTTT---TCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAG 61960 Query 164180 TTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATA 164239 |||| ||| || |||| | || ||||| | ||||||| | || | | | ||||||| Sbjct 61961 TTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATA 62020 Query 164240 CATTGTATGAAGATGGAGA 164258 | || | ||||||||| || Sbjct 62021 CTTTATTTGAAGATGGTGA 62039 >seq60 Length=520799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 164440 GGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAA 164499 ||||| |||| || | |||||||| || || || ||| | ||| | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 164500 GATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCA 164559 |||||||| || ||||||||||| ||||| || || | || ||||| || | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 164560 TGG 164562 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557522972431200