Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq194 217 2e-51 seq471 165 9e-36 seq60 113 5e-20 seq407 98.7 1e-15 seq116 98.7 1e-15 >seq194 Length=269275 Score = 217 bits (240), Expect = 2e-51 Identities = 241/320 (75%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 168968 AGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATT 169027 ||| || || |||||| | ||||| | |||||||| ||||| ||||| |||| ||||| Sbjct 236929 AGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATT 236988 Query 169028 TCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGT 169087 |||||||||||| || || ||| | || || | || ||||| | ||| |||||||||| Sbjct 236989 TCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGC 237048 Query 169088 TACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGA 169147 ||| || || |||||| | | | |||||||||| |||||||| ||| || ||| | Sbjct 237049 TACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 237108 Query 169148 CAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGAT 169207 | ||||| | || || || |||||||||||||| || ||||| || ||||| || || Sbjct 237109 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAAT 237168 Query 169208 CTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 169267 |||||| |||| || |||||| | ||||| |||||||||||| | ||||| || || Sbjct 237169 CTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 237228 Query 169268 TATGGGTCTTTGGACAAGTT 169287 | ||| | |||| ||||| Sbjct 237229 AACCGGTTTATGGA-AAGTT 237247 >seq471 Length=100806 Score = 165 bits (182), Expect = 9e-36 Identities = 205/277 (74%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 168612 TGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCA 168671 ||||||| ||| || ||||| ||||||||| ||| |||| || ||| | || || ||| Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTTTAACGGCTGCA 70243 Query 168672 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCA 168731 ||| || || || || | | | |||||| | || | |||||||||||| | ||| Sbjct 70244 GTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGCA 70303 Query 168732 CAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 168791 ||||| ||||| | ||||||||| | || || || ||| ||||||| || |||||| Sbjct 70304 CAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCAC 70363 Query 168792 GGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGT 168851 || ||||||| ||||| ||||||||| | |||| |||||||| || || || | || Sbjct 70364 GGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCG-ATC-TGTGT 70421 Query 168852 A--TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 168886 | | ||||| || ||||| ||||| |||||||| || Sbjct 70422 AATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 113 bits (124), Expect = 5e-20 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 169302 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361 || || |||| ||| | |||||||||||||| |||| || | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421 ||||| || |||||||| ||||||||||| || || ||||| ||||| ||| ||||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 169422 TGG 169424 ||| Sbjct 267456 TGG 267454 >seq407 Length=272206 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 168975 TTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATG 169034 || ||||| | ||||| | |||||||| ||||| ||||| |||| | |||||||||| Sbjct 61894 TTTCGATTTATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATG 61953 Query 169035 ATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTA 169094 ||||| || || ||| | || || | || ||||| | ||| ||| |||||| || | Sbjct 61954 ATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTC 62013 Query 169095 GAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTC 169136 || |||||| | | | |||||||||| ||||||| ||| Sbjct 62014 GAAAATACTTTATTTGAAGATGGTGATGGTACAAATACATTC 62055 >seq116 Length=395782 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 167301 GCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTC----GACGAGTGGTT 167356 ||||||||| | ||||| || || || |||||||| | || || || || ||||| Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 167357 GTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTA 167416 ||||||||||||||| |||| | ||| | |||||| | |||| | | || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 167417 TATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGC 167476 |||||||||||||||||||| || |||| | ||||||| || ||||| |||||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 Query 167477 AT 167478 || Sbjct 22919 AT 22920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560546641454400