Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq194 224 1e-53 seq471 147 3e-30 seq116 95.1 1e-14 seq407 82.4 9e-11 >seq194 Length=269275 Score = 224 bits (248), Expect = 1e-53 Identities = 249/331 (75%), Gaps = 1/331 (0%) Strand=Plus/Plus Query 183649 CCTAGTTTCGGGGTAGCA-GCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAA 183707 ||||| || || |||||| || || ||| ||||| | | || |||| || || || || Sbjct 236911 CCTAGCTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAA 236970 Query 183708 CTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACT 183767 |||||||| ||||| || ||||||||||||||||| ||| || |||| | || | || Sbjct 236971 TTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCT 237030 Query 183768 CAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAA 183827 ||||||| ||||||| || || || ||||| || | ||||||||| || ||||| Sbjct 237031 ATGTGCTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAA 237090 Query 183828 CACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAA 183887 |||||| || ||| | | ||||||| ||||| || ||||| |||||||| || || Sbjct 237091 TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAA 237150 Query 183888 TCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTT 183947 || || ||||| |||||||| |||||||| ||| ||||| |||||||| || ||||| Sbjct 237151 CCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTT 237210 Query 183948 TATGTTGTTTGTTCCTGTCATGGGTCTTTGG 183978 |||||| ||||| || || | ||| | ||| Sbjct 237211 TATGTTATTTGTACCAGTAACCGGTTTATGG 237241 Score = 140 bits (154), Expect = 4e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 183445 CGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTC 183504 || ||||| ||| || || || |||| |||||| || ||||||||||| |||| || Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 183505 ATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAAT 183564 || ||||||||| | || || |||||||||||||| | || | |||||||| ||| Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTACGTCCTTATAAT 237930 Query 183565 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTG 183624 || ||| | |||||||| || |||||| ||||||| || |||| | || |||||||| Sbjct 237929 GCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTA 237870 Query 183625 GGTCAGTCTTCATGGTTCTTTG 183646 ||||||| ||||| |||| Sbjct 237869 AGTCAGTCGGGTTGGTTTTTTG 237848 >seq471 Length=100806 Score = 147 bits (162), Expect = 3e-30 Identities = 202/277 (73%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 183310 TGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGC 183368 ||||||| |||||| | || ||||||| | | || ||| || ||| | ||||| || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 183369 TGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTC 183428 || || | ||||||| | | | | |||||| | ||||||| ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 183429 TCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCA 183488 ||||| || ||| || ||||| ||| | || || || |||| |||||| || ||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 183489 CGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCT-TGATTG 183547 |||||| || | || || ||||||||| | | || |||||||||||||| | || | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGTGTA 70422 Query 183548 GTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCC 183584 | | |||||||| ||||| ||||| |||||||| || Sbjct 70423 AT-TACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq116 Length=395782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/185 (72%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 182007 GCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACT----TGATGAGTGGCT 182062 || |||||| | ||||| |||||||| ||||||||| | || | |||||| ||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 182063 GTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCT- 182121 | || |||||||||| |||| ||||| | |||||| | | || | || || | Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTG 22855 Query 182122 --ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGT 182179 ||||||| ||||||||||||||| || ||| || ||||||| || ||||| ||| Sbjct 22856 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGT 22915 Query 182180 AGCAT 182184 |||| Sbjct 22916 TGCAT 22920 >seq407 Length=272206 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 183692 TTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 183751 |||| || || || || |||||||| || | || ||||||||||||||||| ||| || Sbjct 61913 TTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCCGGTGTAT 61972 Query 183752 TAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAG 183811 |||| | || | ||| ||||||| |||||| | | || ||||| || | ||||| Sbjct 61973 TAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTATTTGAAG 62032 Query 183812 ATGGAGAACAAGCAAACACATTC 183834 |||| || |||| |||||| Sbjct 62033 ATGGTGATGGTACAAATACATTC 62055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611629049872800