Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq194 226 3e-54 seq471 138 1e-27 seq60 111 2e-19 seq116 107 2e-18 seq407 86.0 7e-12 seq1657 82.4 9e-11 seq42 82.4 9e-11 >seq194 Length=269275 Score = 226 bits (250), Expect = 3e-54 Identities = 243/320 (76%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 166646 AGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATT 166705 ||| || || |||||| |||| || |||||||||| || || ||||| |||||||||| Sbjct 236929 AGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATT 236988 Query 166706 TCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGT 166765 |||||||||||| || || ||| | | || | || ||||| | ||| || ||||||| Sbjct 236989 TCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGC 237048 Query 166766 TACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGA 166825 ||| || || || ||| | | | |||||||||| |||||||| ||| || || | Sbjct 237049 TACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 237108 Query 166826 CTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGAT 166885 | | ||||||| |||||||| |||||||||||||| || ||||||| |||||| || || Sbjct 237109 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAAT 237168 Query 166886 CTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 166945 ||| || |||| ||| |||||| | ||||| |||||||||||| | ||||| || || Sbjct 237169 CTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 237228 Query 166946 TATGGGTCTGTGGACAAGTT 166965 | ||| | |||| ||||| Sbjct 237229 AACCGGTTTATGGA-AAGTT 237247 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 166428 TGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATT 166487 ||||| ||| || || || ||| | ||||||||||||||||||||||||| ||||| Sbjct 238046 TGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATA 237987 Query 166488 GGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGC 166546 ||||||||| | || || |||||| | ||||| ||| || | ||||| || ||||| Sbjct 237986 GGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTACGTCCTTATAATGC 237928 Query 166547 AATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGG 166606 ||| | || ||||| || |||||| | || ||| || || | || || || || | Sbjct 237927 AATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACTAAG 237868 Query 166607 TCAATCGAGTTGGTTTTT 166624 ||| ||| |||||||||| Sbjct 237867 TCAGTCGGGTTGGTTTTT 237850 >seq471 Length=100806 Score = 138 bits (152), Expect = 1e-27 Identities = 201/278 (72%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 166290 TGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTACTGCGGC 166348 ||||||| ||||||| | || || ||| ||| ||| ||||| ||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242 Query 166349 AGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGC 166408 |||||||| || || || | | | |||||| | | | |||||||||||| | || Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 166409 TCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCA 166468 ||||| ||||| | ||||| ||| | || || || ||| | |||||||||||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 166469 CGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCT-AGTA 166526 ||||||||| | ||||| ||||||||| | | || |||||| | ||||| ||| ||| Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGTGTA 70422 Query 166527 GGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCC 166564 || ||||| || ||||| || || || ||||| || Sbjct 70423 ATTA--CGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 111 bits (122), Expect = 2e-19 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 166980 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAG 167039 || || |||| ||| | |||||||||||||| |||| || || | | |||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 167040 GATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCT 167099 |||||||| ||||| || ||||| ||||| || |||||||| || |||||||| ||| || Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 167100 TGGA 167103 |||| Sbjct 267456 TGGA 267453 >seq116 Length=395782 Score = 107 bits (118), Expect = 2e-18 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 164989 CACTTCTATCCTATTTGGGAAGCTGCAACCATG----GATGAATGGTTGTACAACGGTGG 165044 ||||| || || || ||||||||| | || | ||||||||||| |||| ||||| Sbjct 22751 CACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTTACACAATGGTGG 22810 Query 165045 TCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGA 165104 ||||| | | |||| | |||||| | | ||||||||||| |||||||||||||| Sbjct 22811 TCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 22870 Query 165105 GTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATT 165144 ||||||||| || ||| | ||||||| ||||||||| Sbjct 22871 GTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATT 22910 >seq407 Length=272206 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 166653 TTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATG 166712 || ||||| |||| || |||||||||| || || ||||| |||| | |||||||||| Sbjct 61894 TTTCGATTTATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATG 61953 Query 166713 ATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTA 166772 ||||| || || ||| | | || | || ||||| | ||| || |||||| || | Sbjct 61954 ATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTC 62013 Query 166773 GAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACT 166832 || || ||| | | | |||||||||| ||||||| ||| || || || | ||| Sbjct 62014 GAAAATACTTTATTTGAAGATGGTGATGGTACAAATACATTCCGTGCTTTTAACCCKACT 62073 Query 166833 CAAG 166836 | || Sbjct 62074 CGAG 62077 >seq1657 Length=63619 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 43901 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 43960 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 43961 TACCTGACGCGTT 43973 >seq42 Length=433677 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 427913 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 427972 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 427973 TACCTGACGCGTT 427985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563599107325440