Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq694 134 2e-26 seq928 123 3e-23 seq1254 96.9 4e-15 >seq694 Length=127158 Score = 134 bits (148), Expect = 2e-26 Identities = 248/362 (69%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAA--TGATATA 18726 ||| || || || |||||||||| |||||||||||||||||||||| || ||||| Sbjct 32678 TTTCTGGTACTCCCCAACTCTTTTCTCAAAGAAATTAGTTTTTCCCTGCAAACTGATAAG 32619 Query 18727 CATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAAT 18786 | ||||| ||||||| ||||||| ||||| || ||||||| | || || | Sbjct 32618 C--TCCATCCAATCAAACGGATTTTGCACATTGTACATTTTTTCATACCCCAAAGCCTGC 32561 Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846 | |||||||| || ||||| | || || | |||||| ||||| ||||||||| | Sbjct 32560 AAAAGTCTATCGGCCACAAACTCGATGTAAACGCTCATCAGATCACCATTCATTCCCACA 32501 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | | ||||| |||||| || ||||||| | || || || || || || | | Sbjct 32500 AGGGCACAAGGTAATGCATCGCAAACAAATTCTCGCTCAATCACGACCGCATCAGACACA 32441 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 || | || || || ||| || | || | || | | | |||||| ||| Sbjct 32440 ATCTCTCTCACCCTCTCCTCACTAAGCTTGTTTTTCAGCAACTCGTAGAGCAAACAAGCA 32381 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||||| || || |||||||||| | ||||| ||||| || || || | ||| ||| Sbjct 32380 AAATCACAGTGAAGGCCCTCGTCTCGAGAAATCAACTCATTTGAGAACGTGAGACCTGGC 32321 Query 19027 AT 19028 || Sbjct 32320 AT 32319 >seq928 Length=80382 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||||||||| || || ||||||||| |||||||| ||| || | || | | Sbjct 51708 GTTCCAGCATTAAATAAAGTAGGCGATGCATGAGTAAACCATCTCTGAGACATAAAATGA 51767 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || ||| ||| | ||||| ||||| || || || || | |||||| | ||||||| Sbjct 51768 TAGGTTCGTATAGCTGAATCAATATCATTTTTGTGAATTCCAACAGATACTCTCATTAAC 51827 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | ||| || |||||||||| ||| |||| ||||| | ||| || |||| | Sbjct 51828 ATGTGTTGTGGCCTTTCAACAACTTTCCCTTTTACTTTCAGCAAATAGGACCTTTCGAGG 51887 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||||||||||| || | || |||||| ||||| || ||| Sbjct 51888 GTTTTAAAACCAAAGTAATCATAATCAAAGTCACGATCATATATTATT 51935 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 |||| ||| |||||||| | ||| | || || | ||| | |||| | |||||| || Sbjct 50758 TTTACCACCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCAGCATTGGAAC 50817 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 ||| ||||||||| | ||||| ||||| |||||| || || |||| | ||||||| Sbjct 50818 AATGCCATTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCACGTATATTATG 50877 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 || || | |||||| ||||| || || ||| | ||||||| ||| | ||| Sbjct 50878 AACAGATACACCTATTCCACCAGCTGACTTGCTTATAACAGCACACTCTTTCAAACAATC 50937 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 |||||||||||| ||||||||||| |||| || || || ||||| Sbjct 50938 ATAAATTCCTTCAATACTATCATCCTTCATGCATACTAAGAAGCAACT 50985 >seq1254 Length=70693 Score = 96.9 bits (106), Expect = 4e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||| | ||||| | || |||| | ||||| || | ||||| Sbjct 37260 ACCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACACGCAACATGGGAATTATACC 37201 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||||||||| || |||| | ||||| || || Sbjct 37200 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCCCGGATATTGTGAACWGA 37141 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || || || | ||||| ||| | |||||||||||| Sbjct 37140 TACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATTCTTTCAAGGTATCATAAAT 37081 Query 48539 TCCTTCTATACTATCATCTATCATA 48563 |||||| || ||||||||| ||||| Sbjct 37080 TCCTTCAATGCTATCATCTTTCATA 37056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562047277191840