Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq116 84.2 7e-12 >seq116 Length=395782 Score = 84.2 bits (92), Expect = 7e-12 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 5797 AATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGC 5856 |||||| ||| |||| || || | | ||||||||||||| | || |||| |||| || Sbjct 22910 AATCCAAGGTTGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGC 22851 Query 5857 GATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTC 5916 | ||||| | |||||| | || | |||| | || || ||||||| | |||||| Sbjct 22850 TACACCAAGTAAGAAGTGTAGAACAATTAGTTCACAAGGACCACCATTGTGTAACCATTC 22791 Query 5917 ATCGA--GATTG--GCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGC 5972 ||| | || | | |||||||| || || || ||||| || ||||| || || | Sbjct 22790 ATCAACGGACGGACGTAGCTTCCCATATTGGGTAAAAGTGCAAACCAATAGCTGCAGAAC 22731 Query 5973 TGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGC 6024 | | || | | | || || || || ||||| || ||||||||||| || Sbjct 22730 TATAAATAATGACATCGGAAATAATATTATTTCCGTAAAGTAGAGATCCAGC 22679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152633727876216