Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq139 140 2e-28 seq187 107 1e-18 seq260 84.2 2e-11 >seq139 Length=432677 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || || || |||||||| || ||| |||||| ||||| ||||| |||| | Sbjct 177648 CCTCCCCGCAGGCGTAAAACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCT 177707 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGG 48658 | | | || | || |||||||| ||||| ||||||||||| | ||| || || ||||| Sbjct 177708 AAAGTCCGTCCATCTTCCAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCTGGTGGG 177767 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | | |||||||| || |||||| || ||| | | | || ||||| |||||| Sbjct 177768 ATC-CCCTCCTTATCTTGAATCTTAGCCTTCACATTATCAATAGTGTCTGAACTCTCCAC 177826 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || |||||||| |||||||| || || ||||| || |||||| Sbjct 177827 CTCCAATGTGATCGTTTTCCCCGTCAACGTCTTAACAAAGATTTGCATC 177875 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| | ||| | ||| | || || || || |||||||| |||||||||| Sbjct 178332 CCGCCCCTCAACCGGAGCACAAGGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAGCA 178391 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| |||||||| || || | ||| ||||| | ||| Sbjct 178392 AGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGATCTGGCGGA 178451 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||||| || ||| | | | | || || ||| ||| Sbjct 178452 ATACCCTCCTTGTCTTGAATCTTTGTCTTGACATTATCGATGGTATCCGAGCTCTCAACC 178511 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 178512 TCTAGAGTAATAGTCTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 178558 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | ||||||||| || || ||| || || || ||||||| | Sbjct 177876 CCTCCCCTCAAACGGAGCACCAAATGAAGTGTCGACTCCTTCTGTATGCTGTAATCTGCA 177935 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| || | |||||| ||||| || ||||| | ||| ||||| | ||| Sbjct 177936 AGTGTACGACCGTCCTCTAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGAGGA 177995 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || |||||| || ||| | | | | || || ||| ||| Sbjct 177996 ATACCCTCTTTATCCTGGATCTTTGCCTTAACATTATCGATTGTATCAGAACTCTCGACC 178055 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || ||||| || || ||||||||||||||| Sbjct 178056 TCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTAACAAAAATCTGCATC 178103 >seq187 Length=363338 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| |||| || || || || || |||||||| |||| ||| | ||| |||| || Sbjct 22470 ACCAAGTGTAAGGTACTTTCCTTCTGGATATTGTAGTCAGCTAGCGTACGACCGTCCTCG 22529 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || |||||||| || || | ||| ||||||| ||||| || |||||||| | Sbjct 22530 AGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGA 22589 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || ||||||||||| || || || ||| Sbjct 22590 ATCTTGGCTTTAACATTGTCTATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTT 22649 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || ||||| |||||||| Sbjct 22650 CCAGTAAGCGTCTTGACAAATATCTGCAT 22678 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||||| || || || |||||||||| ||| | || |||| ||| Sbjct 22014 ACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAATCAGCTAGGGTGCGGCCGTCCTCC 22073 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| |||||||| || || || | ||| ||||||| ||||| ||||||||||| | Sbjct 22074 AGCTGTTTACCGGCGAAGATGAGCCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGA 22133 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || || | | | || || ||| ||||||| || || || || Sbjct 22134 ATTTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTTG 22193 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| || ||||| Sbjct 22194 CCGGTCAACGTCTTGACAAAGATTTGCAT 22222 >seq260 Length=279698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| |||||| || || || ||||| | | | | | | || |||||||| Sbjct 161887 ATGAAGAGTGGACTCTTTCTGGATGTTATAATCCGCCAAAGTCCTCCCATCCTCCAACTG 161946 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || |||| | ||| ||||||| ||||| |||||||| || |||||| Sbjct 161947 CTTGCCGGCGAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGAATCTT 162006 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || ||||||||||| || || || || ||||| Sbjct 162007 GGCCTTCACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCCGT 162066 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 162067 AAGGGTCTTGACAAATATCTGCAT 162090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380896948720188