Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq5745 116 7e-21 >seq5745 Length=1023 Score = 116 bits (128), Expect = 7e-21 Identities = 232/339 (68%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 172140 TTCGATCGGGCCGAGCCAATGGCTTTCCTTTTCCTGGTTCAGGAAGTATTCCAGGCCGAC 172199 ||||||| | |||| ||| ||| | ||||| || || || ||| | | ||| ||||| Sbjct 563 TTCGATCAGCCCGATCCAGTGGGTATCCTTGTCGGTGTCGAGAAAGAAGTTCAGCCCGAC 622 Query 172200 CAGCAACAGGAACGTGCCGCCGAACGCCGCGACGATGTGATGCACGCCTTCCAGCGTGTG 172259 || ||||||| ||||||||| | |||| | | |||| ||||||| | |||| Sbjct 623 CATGCCGAGGAACGCGCCGCCGAAGCCGGCGATGCCGATATGCGCGCCTTCGATGATGTG 682 Query 172260 GCCGTATCGGTTCGGGTCTTGGAACGCCATCTCCAGCACGGCCGCCGGC--GACATGTGC 172317 ||| | ||| || | |||| || | | |||| |||| ||| ||||| Sbjct 683 CTGATATTGCACCGGATCGGCGGCGGCCAGCTTGATCGCGGCGATCGGCCCGACCTGTGC 742 Query 172318 GCCGCGAAGGCGACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATG 172377 | |||| ||||||||| | ||| ||||||| ||||| |||||||| ||||| | Sbjct 743 G--GCGATGGCGACGATGGCCAGCGGAAAGATGATCCGCATCCCGAACACCGCGATCAGC 800 Query 172378 ATGCCG-ACGCCCAGGAAGAGCTTCTTCCACTTCTCGTCCCAATTCTGAAGAACGTGGGC 172436 | ||| ||| | ||||| | | | ||| || |||||| | | || || || Sbjct 801 ACGCCCCACGTC-AGGAACCGGTGCCGCCATTTGTCGTCCATGTCGCGCAGCACCGTCGC 859 Query 172437 GTTGACGACGGCGTTGTCGAACGACAGCGAGATTTCCAG 172475 |||||| ||||| ||||||||||||||||| | |||||| Sbjct 860 GTTGACCACGGCATTGTCGAACGACAGCGATACTTCCAG 898 Score = 100 bits (110), Expect = 5e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 171702 CAGCATCATGCCGGCGAGCGCCAGGATTGCCCAGAAGGCTCCCATCTCCAGGTGCGGGAA 171761 |||||| || |||| ||||| | ||| || |||| || || ||||| | | | Sbjct 113 CAGCATGATCGCGGCCAGCGCGATGATCGCATAGAATGCGCCATGTTCCAGATAGCGATA 172 Query 171762 CTCGGTCAGCGTGCCGCGATCAACCGCCAGCAGCGTCAGTTCCCGAACGGCCAGGGCGCC 171821 ||||||||||||||| |||| ||| || | ||||| ||| ||| || || || Sbjct 173 TTCGGTCAGCGTGCCGTGATCGACCAGCATGATCGTCATCGACCGCACGAACATCGCCCC 232 Query 171822 CACGCCGAGACCCACCATGATCCAGACGATGTTGCTCGTCAGTGCGAAGGCGCCGATGAC 171881 | |||||| |||| | ||| || | |||| ||| ||| ||||| || ||||| || Sbjct 233 GATGCCGAGGCCCAGCGCGATGATGAACAGGTTGTTCGACAGCGCGAACGCCCCGATCAC 292 Query 171882 GCCGTCAAACGAGAAGCTGGCGTCCAGGACTTCCAGGTAGATGAA 171926 ||| || ||||||||| ||||| || ||||| || || | ||| Sbjct 293 GCCATCGAACGAGAAGGACGCGTCGAGCACTTCGAGATACAGGAA 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895668358367520