Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq912 102 1e-16 >seq912 Length=70991 Score = 102 bits (112), Expect = 1e-16 Identities = 558/873 (64%), Gaps = 67/873 (8%) Strand=Plus/Plus Query 147980 CTGGGCCAGCGACGCGGCGGTGAAGATGAAGCGCTTGTCGCCCTTCAGGA---CCTTCAG 148036 ||| ||| | | |||||||||||||||| | | |||||| || ||| || ||| Sbjct 4888 CTGCGCCTGTGTCGCGGCGGTGAAGATGCACCTTTTGTCG---TTGCGGAGCGCCGACAG 4944 Query 148037 CCAGGAGGCGACATAGGAGGCGTGGTCTTCGCGGACTTCCGGGGTCAGGCCGAGGATGGC 148096 |||| || | ||||| ||| ||||| ||||| | | | | | ||||| | | Sbjct 4945 CCAGTTCGCCAGATAGGCGGCATGGTCCTCGCGATCGTGGAGTTTGATGCCGATCGCGCC 5004 Query 148097 GCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTAGGCCTCG----T 148152 | || ||| || | |||||||||||||||||||||||| ||||||| ||||| | Sbjct 5005 ACTGACGAACGCGGCCCCCAGTTCGGCGACCAGTTCCTCGCGGGCGTAGTCCTCGCGCTT 5064 Query 148153 CACCGAAGCGCTTGCCGAACTCGCGGTTCAGGCGGTCCTCGCGGCCGGTCCAGTGGACGA 148212 | ||| | ||| ||| || ||||| || |||||||| |||| | Sbjct 5065 CGTGGAAAGGAG----GAAGGGACGGGCAAGACGGTCGGCGTGGCCGGTCGCGTGGCAAA 5120 Query 148213 ACTCGTGGCCGAGGGTGGCGTAGTAGCTCTC-CTCGTCGCGGAAGGCGTCGAACTGGGGC 148271 |||||| | ||||| | || || || || || | ||||| || ||||| |||| Sbjct 5121 GTTCGTGGGCAAGGGTCGAATAATAATCGTCGCTGGT-GTGGAAGTCGGCGAACACGGGC 5179 Query 148272 ATCTGGATGAAGTCCAGGTGCGGC-GAGAAGAAGGCCCGGTGACCGCCGTGGCGCACCTC 148330 || || | || | |||| || || | ||| || |||||||| || Sbjct 5180 ATGACGACGTGATCGCCGCCCGGCTGATAATAGGGC----TGCGCGCCGTGGTGCTTGAG 5235 Query 148331 GG-CGCCCGTG-GCG-GCGAAGAACTTCTCGACCGCCGCGTTGCGCTCCAGGACCCGCTT 148387 || | | || ||| ||||| | | || | | | |||| |||||| | | | || Sbjct 5236 GGTCACGGGTACGCGCGCGAACAGCGCATCCAGCTCGGCGTCGCGCTC---GTCGGGATT 5292 Query 148388 GGCTTCCTCGGCGGGCGTCGC-CGGCGCCGGGGCGGGCTTCTGGTAGAAGCGCTCGGGCA 148446 || ||| || | || |||||| |||||||| | || || ||| | Sbjct 5293 GG-----TCGC--GGTGACGATCGGCGCGGGGGCGGGATATTGC-----GC-CTCA---A 5336 Query 148447 GGCCGTCGATCTGCTCGACATTGAACACCAGATAGGACTTCAGGAACGGGATCATCCGTT 148506 |||||||||||||||| | |||||||| | |||| |||||||| || || || | Sbjct 5337 TGCCGTCGATCTGCTCGGCGTTGAACACGACATAGCGTTTCAGGAAGGGAATACCGCGCT 5396 Query 148507 CGACGTCCTTGCCGTTGGCGTCCTTCTCGGTCTTCTTGAACTTCGAGGCGTAGACGATCA 148566 ||| || | ||| | ||| || ||||||| || || | ||| ||||||| || Sbjct 5397 TGACCTCATCGCCCGCGTCGTTCTCCTCGGTCCGCTCGATCCGGTTGGCATAGACGA-CA 5455 Query 148567 GTTCGGA---CTTCTCGCCCTTGCGGACCTGACCACCCAGGTCCCTGGCTTGGTTGTAGG 148623 |||| |||||||||||||||||| ||| |||| | | || || ||| ||| Sbjct 5456 --ACGGAACCCTTCTCGCCCTTGCGGACGCAACCGCCCATTGCGATTGCCTGCTTGAAGG 5513 Query 148624 TCATCCAGGTCGGGTTGGTGTAGCCGCGCTCCTGGGCGGCGGCCCACAGGAGGACCACGT 148683 ||| ||| |||| | |||||| | | |||||| |||||||| | |||| Sbjct 5514 TCAGCCAATGCGGGGCAGCGTAGCCCTTCGTCATGGCGGCAACCCACAGGGTCAGGACGT 5573 Query 148684 TGATCCCGGTGTAGCGCTGGCCGGTCACCCGGCG-GGGATAGATCGCCATGCCGGCCGAG 148742 |||| || ||| |||| | ||| | |||||| ||| | || ||| Sbjct 5574 TGATACCACGATAGGCAACGCCGTTGCTGCGGAGCGGGATA-TTCGGCGTG------GAG 5626 Query 148743 GCGCCGCCGGGAGCCGACCACGGCTTCAACCAGGGACGCACGCCAGCGTCGAGCGCGGCG 148802 || ||| ||||| ||| |||| || || |||||| |||| | |||| Sbjct 5627 GCACCG---------TTCCACGATTTCGACCAAGGCCGTGTGCCAGCCTCGATCATGGCG 5677 Query 148803 ACGATCTTGTCGGTGATCTTCTGATAGAGGTCG 148835 | |||| ||||||||| | |||||||| |||| Sbjct 5678 ATCATCTGGTCGGTGATTTCCTGATAGACGTCG 5710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701286435797760