Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq194 203 4e-47 seq471 116 4e-21 seq60 102 9e-17 >seq194 Length=269275 Score = 203 bits (224), Expect = 4e-47 Identities = 242/327 (74%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 165080 CTTTGGGGTGGCA-GCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGA 165138 |||||| || ||| || || ||| ||||| | | || |||||||||| || || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 165139 CCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTG 165198 | | ||||| || ||||||||||| ||||| ||| | || || | || ||||||| || Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 165199 CTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCT 165258 |||||||||| | || || |||||||| |||| || ||||| || |||||||| | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 165259 TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 165318 | || ||| | | || || | ||||| |||||||| ||||| || || ||||||| Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 165319 TCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGT 165378 | ||||| || ||||| || |||| |||||||| || || ||| | ||||| || |||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 165379 TGTTTGTGCCTGTTATGGGTCTTTGGA 165405 | ||||| || || | ||| | |||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 122 bits (134), Expect = 1e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 164871 CGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTA 164930 || ||||| ||| || || || |||| ||| || |||||||||||||| || | ||| Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 164931 ATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAA 164989 || ||||||||| | || || ||||| || || || ||| || | |||||||| || Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTACGTCCTTATAA 237931 Query 164990 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACT 165049 ||| ||| | |||||||| || |||||| ||||||| | ||| | || || ||||| Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACT 237871 Query 165050 GGGTCAGTCCAGTTGGTTTTT 165070 ||||||| |||||||||| Sbjct 237870 AAGTCAGTCGGGTTGGTTTTT 237850 >seq471 Length=100806 Score = 116 bits (128), Expect = 4e-21 Identities = 195/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 164736 TGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGC 164794 ||||| | ||||| | || ||||||| | | || ||| || ||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 164795 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 164854 || || | ||||||| || | | | |||||| | | |||| ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 164855 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 164914 || || |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 164915 CGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTG 164973 |||||| |||| ||||| ||||||||| | | || ||||| || || || ||| | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGTGTA 70422 Query 164974 GTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCC 165010 | | |||||||| ||||| ||||| |||||||| || Sbjct 70423 AT-TACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 102 bits (112), Expect = 9e-17 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 165426 GGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 165485 || || |||| ||| | |||||||| || ||||| |||| | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 165486 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCT 165545 ||||| ||||||||||| |||||||||||||| || || || || || || | |||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 165546 TGG 165548 ||| Sbjct 267456 TGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563147956709280