Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq194 199 4e-46 seq116 111 2e-19 seq60 91.5 2e-13 >seq194 Length=269275 Score = 199 bits (220), Expect = 4e-46 Identities = 232/313 (74%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 10301 GCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTC 10360 || || || || ||| | ||||| | || || ||||||||||||||| | || || || Sbjct 236930 GCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATTT 236989 Query 10361 CATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTC 10420 ||||||||||||||||| ||| || | || | ||| | |||| || || || || | Sbjct 236990 CATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGCT 237049 Query 10421 ACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGAT 10480 ||||| ||||| || | | | ||||||| || ||||| || ||| |||||| | Sbjct 237050 ACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 237109 Query 10481 AGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATA 10540 ||||||| ||||| || ||||| |||||||| |||||||| || |||||||| || Sbjct 237110 CCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATC 237169 Query 10541 TTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTT 10600 ||||| |||||||| |||||||| ||| | |||||||||||| | |||||||| || Sbjct 237170 TTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTA 237229 Query 10601 ATGGGTCTTTGGA 10613 | ||| | |||| Sbjct 237230 ACCGGTTTATGGA 237242 >seq116 Length=395782 Score = 111 bits (122), Expect = 2e-19 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 8401 GCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAAC 8460 ||||||||||| | ||||| || || || || || | || || || || ||| Sbjct 22679 GCTGGATCTCTACTTTACGGAAATAATATTATTTCCGATGTCATTATTTATAGTTCTGCA 22738 Query 8461 GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTC--TC--TTGATGAGTGGCT 8516 || ||||| | ||||| ||||| || |||||||| | || || ||||||| ||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 8517 CTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTA 8576 |||| |||||||||| | || | ||| | |||||| | ||||| || | ||| Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 8577 TATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGC 8636 ||||||||||| ||||||||| || ||| | || |||| |||||||| |||||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 Query 8637 AT 8638 || Sbjct 22919 AT 22920 >seq60 Length=520799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 10620 CTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGA 10679 || ||||| | | || || |||| || | |||||||| || || || | ||| | | Sbjct 267590 CTCTTGGAGTAGTCGGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAA 267531 Query 10680 TCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACG 10739 | | || |||||||||||||||||||||| ||||| || || ||||| || | |||| Sbjct 267530 TTCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACG 267471 Query 10740 AAGGTCTTCGTGCATGGA 10757 | ||| ||||||| |||| Sbjct 267470 AGGGTATTCGTGCTTGGA 267453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516423471264000