Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1646 89.7 4e-13 seq187 84.2 2e-11 seq771 82.4 6e-11 >seq1646 Length=84127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 28634 GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGG 28693 ||||||| || ||||| ||||| | ||| ||| || ||||| | |||||||| || Sbjct 61332 GCAAAAATTCAG-GACAAGGAGGGCATTCCCCCAGACCAGCAGAGGTTGATCTTTGCAGG 61274 Query 28694 CAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCT 28753 ||| || ||||||||| | ||| |||||||||||||||| || ||||| || ||||| Sbjct 61273 CAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATAACATCCAGAAAGAGTCCACTCT 61214 Query 28754 GCAC 28757 ||| Sbjct 61213 TCAC 61210 >seq187 Length=363338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || || ||||| | ||| ||| || ||||| | |||||||| ||||| || |||||| Sbjct 29339 GATAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAA 29280 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||| | ||| |||||||||||||||| || ||||| || ||||| ||| Sbjct 29279 GATGGGAGGACTTTGGCCGATTATAACATCCAGAAAGAGTCCACTCTTCAC 29229 >seq771 Length=161796 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 28647 GACAAAGA-GGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGA 28705 ||||| || |||| | ||| | || || ||||| | |||||||| || ||||| ||||| Sbjct 43591 GACAAGGAAGGGATTCCCCCT-GACCAGCAGAGGTTGATCTTTGCTGGGAAACAGTTGGA 43649 Query 28706 AGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 | || | ||| |||||||||||||||| || ||||| |||||||| ||| Sbjct 43650 ATATGGGAGGACTTTGGCCGATTATAACATCCAGAAAGAGTCTACTCTACAC 43701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425359403458524