Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq194 196 5e-45 seq471 147 2e-30 seq116 111 2e-19 >seq194 Length=269275 Score = 196 bits (216), Expect = 5e-45 Identities = 236/320 (74%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 162602 AGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTT 162661 ||| || || |||||| | ||||| | ||||| || ||||| |||||| | || || || Sbjct 236929 AGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATT 236988 Query 162662 TCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGT 162721 ||| |||||||| || || ||| | | || | || ||||| | |||||||||||| | Sbjct 236989 TCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGC 237048 Query 162722 GACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGA 162781 || || |||||||| | | |||||||| || ||||| || || || ||| | Sbjct 237049 TACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 237108 Query 162782 CTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGAT 162841 | | || || | |||||||| ||||| |||||||| || |||||||| ||||| || || Sbjct 237109 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAAT 237168 Query 162842 TTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGT 162901 || || |||||||| ||| || |||||||| |||||||||||| | ||||| || || Sbjct 237169 CTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 237228 Query 162902 CATGGGTCTCTGGACAAGTT 162921 | ||| | |||| ||||| Sbjct 237229 AACCGGTTTATGGA-AAGTT 237247 Score = 109 bits (120), Expect = 6e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 162381 CGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTT 162440 || ||||| ||| || || || ||||||||||| || |||||||| || |||| ||| Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 162441 ATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAA 162499 |||||||||||| | || || |||||||| || ||| || || | | |||||||| || Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TACGTCCTTATAA 237931 Query 162500 TGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTT 162536 ||| ||| | ||||| || || |||||| | || ||| Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTT 237894 >seq471 Length=100806 Score = 147 bits (162), Expect = 2e-30 Identities = 202/277 (73%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 162246 TGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGC 162304 ||||||| ||| ||| | || ||||||||| | | ||| ||||| ||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTT-TAACGGCTGC 70242 Query 162305 AGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTC 162364 |||||||| || || | | | | |||||| | || | || ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 162365 TCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCA 162424 ||||| || || | || ||||| ||| | || || || ||||||||||| || ||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 162425 CGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGG 162484 ||| || || | ||| |||||||||||| | | || |||||||| || ||| | | | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGT-GT 70421 Query 162485 TATT-CGTCCTTACAATGCTATTGCTTTCTCAGGTCC 162520 ||| |||||||| ||||| ||||| ||||| || || Sbjct 70422 AATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq116 Length=395782 Score = 111 bits (122), Expect = 2e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 161029 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 161088 ||||| || || | || ||||| || || || || | || |||| | |||| Sbjct 22679 GCTGGATCTCTACTTTACGGAAATAATATTATTTCCGATGTCATTATTTATAGTTCTGCA 22738 Query 161089 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAA--GTCTG--GACGAATGGCT 161144 ||||| ||| ||||||| ||||| || |||||||| | ||| | || |||||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 161145 CTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTA 161204 |||| |||||||||| |||| |||| | |||||| | |||| | | ||| Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 161205 CATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATT 161256 |||||||||||||||||||||| || |||| |||| |||| ||||||||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATT 22910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547687249068960