Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq194 217 2e-51 seq471 118 1e-21 seq60 86.0 8e-12 >seq194 Length=269275 Score = 217 bits (240), Expect = 2e-51 Identities = 249/332 (75%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 101918 AACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTAT 101977 ||||| |||| | ||| | || || ||||| | |||||||||||| ||||| | |||| Sbjct 237247 AACTT-TCCATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTAT 237189 Query 101978 TACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAG 102037 || ||| |||| ||||||||||| ||||| || ||||| || |||||||||||||||| Sbjct 237188 TAGAAAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTAACCATTGAATAAG 237129 Query 102038 TCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCAT 102097 | ||||| |||| || | | || || ||| || ||||| ||||||||||||| Sbjct 237128 TTTCTTCGGCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAA 237069 Query 102098 ACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATAC 102157 | | ||| || || ||||| |||| || || || | |||| || | || | | || Sbjct 237068 ATAAAGTATTTTCGACAGTAGCACCATGAATAGCACATAGCAAAGCCGCCCCTAATACAC 237009 Query 102158 CTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGA 102217 | ||||| ||||||||||| |||||||| | |||||| ||||| || || || | |||| Sbjct 237008 CGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGAAAAAAGA 236949 Query 102218 GTAGGAATCTAAATATCGC-TGCAACACCAAA 102248 | | ||||| |||||| || ||| |||||||| Sbjct 236948 GGATGAATCGAAATATAGCTTGCTACACCAAA 236917 Score = 113 bits (124), Expect = 6e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 102257 CAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGA 102316 |||| ||||||| ||||| | || ||||| || | || || ||||||| ||| | Sbjct 237848 CAAAAAACCAACCCGACTGACTTAGTGGATAAATCAAGAATGCAGAAACAAAAATAGCAA 237907 Query 102317 TAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCGA 102376 | || |||||||| | ||| ||||| || ||||| | | || | | ||| | || | Sbjct 237908 TTGGGCCAGAGAATGTAATTGCATTATAAGGACGTAATTGAACAGATCGAGCAAGTTCAA 237967 Query 102377 ATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGA 102436 ||||||| | ||||||||| || || |||| |||||||||||||| ||||||| ||| | Sbjct 237968 ATTGACGTAACATGAAACCTATTAGTCCAAAAGCACCGTGGAGAGCAACAAAAGTCCACA 238027 Query 102437 GTCCCCC 102443 | || || Sbjct 238028 GACCACC 238034 >seq471 Length=100806 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 102319 GGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAACCTAGCCAACTCGAA 102377 || |||||||| ||||| ||||| || ||||| |||| || | | ||| | || || Sbjct 70458 GGGCCAGAGAATGCAATCGCATTATAAGGACGTAATTACACAGATCG-AGCAAGTTCAAA 70400 Query 102378 TTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAG 102437 ||||| | ||||||||| || || | || |||||||||||||| ||||||| ||| || Sbjct 70399 TTGACATAACATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAAAGTCCACAG 70340 Query 102438 TCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAG 102497 || || | ||| ||| | ||||||||||| |||| ||||||||| |||| | Sbjct 70339 ACCACCCAATTGACACCAACGAGTAAAATCTCCTTGTGCTTTAGGACCCCAGAGTAACAA 70280 Query 102498 AAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATT 102551 | |||||| | | | | ||||||| | || || ||||| || | ||||| Sbjct 70279 CAAAGAATGTGCTAAACTATTAGCAGGCATAGAAACTGCAGCCGTTAAAAAATT 70226 >seq60 Length=520799 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 101781 CCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGG 101840 ||| ||||| | ||| || || || || || || || |||||||| ||||| || || || Sbjct 267454 CCAAGCACGAATACCCTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGG 267513 Query 101841 ATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAG 101900 |||||||||||| | || | || | || |||||||||||||| | ||| |||| || Sbjct 267514 ATCTTCTGCTGCACGAATTTYCTGAKAAACGAAGTCATAAGCACGTAAGTTCGGAGCTAG 267573 Query 101901 ACC 101903 || Sbjct 267574 GCC 267576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633444261936480