Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1254 98.7 5e-16 seq928 82.4 4e-11 >seq1254 Length=70693 Score = 98.7 bits (108), Expect = 5e-16 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26061 AACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTT 26120 || |||||||||| || || || |||||||| || || | ||||| ||||||||||| Sbjct 37279 AATTACCTTTTCTCTTGCCACCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACAC 37220 Query 26121 TCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCG 26180 |||||| |||| || ||| | || || ||||| | | |||| | ||||| | Sbjct 37219 GCAACATGGGAATTATACCATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAG 37160 Query 26181 ATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT 26240 | |||| |||| | | ||| ||||| ||||| | || || ||||||| | Sbjct 37159 CCCGGATATTGTGAACWGATACACCAATTCCCCCAGCAGACTTGCTGATGACTGCACATT 37100 Query 26241 CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||||| ||||||||| ||||||| Sbjct 37099 CTTTCAAGGTATCATAAATTCCTTCAATGCTATCATCTTTCAT 37057 >seq928 Length=80382 Score = 82.4 bits (90), Expect = 4e-11 Identities = 162/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| || ||||| || || |||||||| || || | || || ||||| || ||| || Sbjct 50748 TACCCTTCCTTTTACCACCCCCTTGATCGACATAACGAGCTGTGTCATTAAATACTCGCA 50807 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||||||||| | ||| |||| || ||||| | | |||| | | || || | | Sbjct 50808 GCATTGGAACAATGCCATTTGATGTCCCATTTGTTCCACGAATATAGCTGCCCGTAGCAC 50867 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC-- 26241 |||| ||| || | ||| ||||||||||| | || ||| | ||||| || Sbjct 50868 GTATATTATGAACAGATACACCTATTCCACCAGCTGACTTGCTTATAACAGCACACTCTT 50927 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAA 26299 | |||| ||| ||||||||| || |||||| | ||||| | || ||| || ||| Sbjct 50928 TCAAAC--AATCATAAATTCCTTCAATACTATCATCCTTCATGCATACTAAGAAGCAA 50983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253012997152700