Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq194 118 1e-21 seq471 93.3 5e-14 >seq194 Length=269275 Score = 118 bits (130), Expect = 1e-21 Identities = 235/347 (68%), Gaps = 22/347 (6%) Strand=Plus/Minus Query 123084 TCCACATACCCATGACAGGAACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAA 123143 |||| | ||| | || || || || ||||||| ||| ||||| | | ||| ||||||| Sbjct 237242 TCCATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTAGAAA 237183 Query 123144 ATGCGATACCAAATATCTGTGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTT 123203 | || | ||||| || || ||||| || | ||| || |||| ||| ||||||||||| Sbjct 237182 AAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTT 237123 Query 123204 CTTCCTGTGTAGGATCGAATGCTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATT 123263 | | || || || | || || | ||| |||| ||| | || ||| || Sbjct 237122 CGGCTTGAGTTGGGTTAAAAGCACGGAA---TGTAT-TTGCA-----CCATCACCAT--- 237075 Query 123264 GTGATGTGTCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATG 123323 ||||| | || || || | || || ||||||||||| |||||||| || | Sbjct 237074 ---------CTTCAAATAAAGTATTTTCGACAGTAGCACCATGAATAGCACATAGCAAAG 237024 Query 123324 CTCCACCTAGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGA 123383 | | |||| || || ||||| |||||||| |||||||| ||||| || || || | Sbjct 237023 CCGCCCCTAATACACCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAA 236964 Query 123384 AACCTTGTATGAATAAGATATAACGAAAGATTGC-TGCGACACCGAA 123429 | ||||| | || | ||| | ||||| || || ||| ||||| || Sbjct 236963 ATCCTTGAAAAAAGAGGATGAATCGAAATATAGCTTGCTACACCAAA 236917 >seq471 Length=100806 Score = 93.3 bits (102), Expect = 5e-14 Identities = 187/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 123504 CAGAGAATGCGAGTGCGTTGTAAGGTC-TAATGCCTACAAGTCCTGCGATCTCAAATTGT 123562 |||||||||| | || || ||||| | |||| | ||| || || | |||||||| Sbjct 70454 CAGAGAATGCAATCGCATTATAAGGACGTAATTAC-ACAGATCGAGCAAGTTCAAATTGA 70396 Query 123563 CTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCT 123622 | | |||||||||||| ||||| || | || || | || ||||| |||| ||||| Sbjct 70395 CATAACATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAAAGTCCACAGACCA 70336 Query 123623 CCGAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGA 123682 || | ||| |||||||| || ||||||||||| ||| ||||| || |||| | | Sbjct 70335 CCCAATTGACACCAACGAGTAAAATCTCCTTGTGCTTTAGGACCCCAGAGTAACAACAAA 70276 Query 123683 CTATGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCA 123742 ||| | | | | |||| | || ||||| || ||||| || || ||| | Sbjct 70275 GAATGTGCTAAACTATTAGCAGGCATAGAAACTGCAGCCGTTAAAAAATTGCAGCCCACC 70216 Query 123743 AGATATGAAGATGCAATACCATGTGTATACCATGA 123777 | ||| ||| || | ||||| |||||||||| Sbjct 70215 AAATAGGAACTGGCCAATCCATGAATATACCATGA 70181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578935028625120