Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq194 201 2e-46 seq471 150 2e-31 seq407 89.7 7e-13 >seq194 Length=269275 Score = 201 bits (222), Expect = 2e-46 Identities = 244/331 (74%), Gaps = 1/331 (0%) Strand=Plus/Minus Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | ||| | || || ||||| ||||||||||| || |||||||| ||||| ||| Sbjct 237241 CCATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTAGAAAA 237182 Query 23666 CGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTC 23725 |||||||| |||||||| |||||||| || || || |||||||| ||||| || || || Sbjct 237181 AGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTC 237122 Query 23726 CTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGT 23785 | ||||| | | || || || || ||||| || ||||||||| | | || Sbjct 237121 GGCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGT 237062 Query 23786 ATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAAC 23845 ||| ||||||||| | |||||||||||| | || | || | || | || ||| ||||| Sbjct 237061 ATTTTCGACAGTAGCACCATGAATAGCACATAGCAAAGCCGCCCCTAATACACCGGCAAC 237002 Query 23846 TCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAA 23905 |||||||||||| || ||||| | |||||| |||||||| || || | ||||| | ||| Sbjct 237001 TCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGAAAAAAGAGGATGAA 236942 Query 23906 CCTGAAAATCGC-CGCAACACCGAAACTCGG 23935 | || || || || ||||| || || || Sbjct 236941 TCGAAATATAGCTTGCTACACCAAAGCTAGG 236911 Score = 134 bits (148), Expect = 2e-26 Identities = 144/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 23938 CAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAA 23997 |||| |||||| ||||| | | ||||| || | |||| |||| || || | ||||| Sbjct 237848 CAAAAAACCAACCCGACTGACTTAGTGGATAAATCAAGAATGCAGAAACAAAAATAGCAA 237907 Query 23998 TAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCA 24056 | || ||||| || | ||| ||||| || ||||| | | || ||| || || |||||| Sbjct 237908 TTGGGCCAGAGAATGTAATTGCATTATAAGGACGTAATTGAAC-AGATCGAGCAAGTTCA 237966 Query 24057 AACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAA 24116 || ||||||||||| |||||||| ||| |||| |||||||||||||||||||| | ||| Sbjct 237967 AATTGACGTAACATGAAACCTATTAGTCCAAAAGCACCGTGGAGAGCAACAAAAGTCCAC 238026 Query 24117 AGCCCTCC 24124 || || || Sbjct 238027 AGACCACC 238034 >seq471 Length=100806 Score = 150 bits (166), Expect = 2e-31 Identities = 204/278 (73%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 24000 GGACCAGAAAAAGCAATCGCATTGTAGGGACGGA-TTCCAATTAGA-CGTGCCAGTTCAA 24057 || ||||| || ||||||||||| || ||||| | || || ||| || || ||||||| Sbjct 70458 GGGCCAGAGAATGCAATCGCATTATAAGGACGTAATTACAC--AGATCGAGCAAGTTCAA 70401 Query 24058 ACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAA 24117 | |||| |||||| |||||||| ||| | || |||||||||||||||||||| | ||| | Sbjct 70400 ATTGACATAACATGAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAAAGTCCACA 70341 Query 24118 GCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAA 24177 | || || | ||| ||| || ||| || ||||| | | ||||||||| |||| | Sbjct 70340 GACCACCCAATTGACACCAACGAGTAAAATCTCCTTGTGCTTTAGGACCCCAGAGTAACA 70281 Query 24178 GAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCA- 24236 | |||||| | | | | ||||||| | || || || ||||| | ||| || ||| Sbjct 70280 ACAAAGAATGTGCTAAACTATTAGCAGGCATAGAAACTGCAGCCGTTAAAAAATT-GCAG 70222 Query 24237 CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCA 24274 ||| | | ||||||||| || | |||||| | ||||| Sbjct 70221 CCCACCAAATAGGAACTGGCCAATCCATGAATATACCA 70184 >seq407 Length=272206 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || ||||||||| | | ||||| |||| | || | |||| ||||||| |||| | || Sbjct 62039 TCACCATCTTCAAATAAAGTATTTTCGAGAATAGCACCATYAATAGCACAGAGCAAAGCC 61980 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 | || | || ||| ||||||||||||||||| || | || | |||||| |||||||| Sbjct 61979 GCCCCTAATACACCGGCAACTCCCATCATATGAAATAGTTTCAACGTCCAATTATGAAAT 61920 Query 23886 CCCTGGAGGAAGAG 23899 || || | ||||| Sbjct 61919 CCTTGAAAAAAGAG 61906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665421561637920