Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1305 120 4e-22 seq1254 109 7e-19 seq132 100 3e-16 seq232 84.2 3e-11 >seq1305 Length=68372 Score = 120 bits (132), Expect = 4e-22 Identities = 228/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| ||| | || || || || |||||| | ||| || || Sbjct 45726 CCAGGAACCGGAAAGACTCTCTTGGCAAAGGCGATTGCTGGTGAAGCTGGTGTTCCTTTT 45667 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||||| | | ||||| ||||||||||||||||| ||||| | ||| Sbjct 45666 TTCTCTATCTCTGGTTCGGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGTT 45607 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || || || ||| ||| || || ||| ||||||||||| || ||||||| || Sbjct 45606 CGTGACCTTTTTAAAAAAGCAAAGGAGAATGCTCCATGTATTGTATTTGTTGATGAAATC 45547 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| || || | ||||| | |||| | | | | || |||||| |||||||||| Sbjct 45546 GATGCTGTTGGAAGACAACGAGGAACTGGAATTGGAGG--AGGAAATGATGAGAGAGAAC 45489 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 | || |||| ||||| | || || ||||| || || || | || ||| || | | Sbjct 45488 AGACTCTTAACCAACTCTTAACTGAAATGGACGGTTTCGAAGGAAACACAGGCGTTATTG 45429 Query 175613 TTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | ||||| || ||||| || | ||||| ||||| Sbjct 45428 TAATTGCAGCTACTAACCGTGCAGATATTCTTGA 45395 >seq1254 Length=70693 Score = 109 bits (120), Expect = 7e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||||| || ||||||||| ||||||||||||||| | || | || || Sbjct 36139 CGGGACTTTGATTATGACTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACTTGTTGAAA 36198 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 || | || | | |||| | ||||| ||||||| ||| | || || | || | Sbjct 36199 A--TCCAAGGAAAGGTTGTGGAGAGACCACAACACATGTTGATGAGAGTTGCTGTTGGGA 36256 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 75304 | || || || |||||||||||||| | || ||| | |||||||| |||| | Sbjct 36257 TACATAAAGAGGATATTGATTCTGTCTTAAAAACGTACCATCTCATGTCCCAGAGGT-GG 36315 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||| ||||||| |||| || |||||||||||||| ||||| || || || Sbjct 36316 TTCACTCACGCATCACCGACTCTCTTCAATGCTGGGACACCTAGGCCTCA 36365 >seq132 Length=337084 Score = 100 bits (110), Expect = 3e-16 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| ||||| || ||||| ||||| ||| ||| || Sbjct 93451 TTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTAGAGTTCGTGATCTTTTTAAAAAGGCT 93392 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || || |||||||||||| || |||| || ||||| || || || | | | | Sbjct 93391 AAGGAGAACGCACCATGTATTGTGTTTGTTGACGAAATTGACGCTGTTGGGAGGTCAAGA 93332 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | || ||| || || || || || ||| |||| ||||| | | Sbjct 93331 GGAACTGGGATTGGAGG--AGGAAACGATGAAAGGGAGCAGACACTTAACCAACTTTTGA 93274 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | || ||||| || ||||| | || || || | || ||||| || |||||||| | Sbjct 93273 CTGAAATGGACGGTTTTGAAGGAAACACCGGTATCATTGTAATTGCAGCAACTAATCGTG 93214 Query 175634 TGGATATCCTTGA 175646 ||||| ||||| Sbjct 93213 CAGATATTCTTGA 93201 >seq232 Length=163650 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 177574 ACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATG 177633 |||| || | |||| | || ||||| ||||| ||||| | || ||| ||||| ||||| Sbjct 146609 ACAGTATGGGACTCCTCAGTGGCGACCACATAATCATCGGGCTTTTCCTGTTGGAGCATC 146668 Query 177634 AGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCT 177677 | ||||||||| ||||||||||| ||| |||||||||||| Sbjct 146669 ATCCACATGGCCTCAACATAGTCTCCGGCGAAACCCCAGTCTCT 146712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596504305457280