Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03]
8,756 sequences; 309,692,940 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq194 206 3e-48
seq471 109 6e-19
seq1610 102 9e-17
seq1089 96.9 4e-15
seq932 96.9 4e-15
seq407 96.9 4e-15
seq455 91.5 2e-13
seq1533 89.7 6e-13
seq116 89.7 6e-13
seq50 89.7 6e-13
seq386 87.8 2e-12
seq32 86.0 7e-12
>seq194
Length=269275
Score = 206 bits (228), Expect = 3e-48
Identities = 225/299 (75%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 167500 GCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTT 167559
|| || || |||||| ||||||| | |||||||| || || ||||| |||| ||||||
Sbjct 236930 GCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATTT 236989
Query 167560 CATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTT 167619
||||||||||| || || ||| | | || | || ||||| | ||| || ||||||| |
Sbjct 236990 CATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGCT 237049
Query 167620 ACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGAT 167679
|| || || |||||||| | |||||||||||| ||||| || || || || |
Sbjct 237050 ACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 237109
Query 167680 TCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATC 167739
| ||||| | ||||| ||||||||||||||||| || ||||| || ||||| || |||
Sbjct 237110 CCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATC 237169
Query 167740 TTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGT 167798
|| || ||||||| || ||||| ||| | ||||||||||||||||| || || ||
Sbjct 237170 TTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 237228
Score = 96.9 bits (106), Expect = 4e-15
Identities = 108/142 (76%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 167293 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT 167352
|| || || ||| ||||||| || |||||||| || |||| || || ||||||||| |
Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975
Query 167353 CGACAGTTTGAACTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTC 167411
|| || |||||||||||||| ||| || | ||||| || ||||| ||| | |||||
Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTG-TTCAATTACGTCCTTATAATGCAATTACATTCTC 237916
Query 167412 TGGTCCTATTGCTGTCTTCGTT 167433
||| || |||||| | || |||
Sbjct 237915 TGGCCCAATTGCTATTTTTGTT 237894
>seq471
Length=100806
Score = 109 bits (120), Expect = 6e-19
Identities = 196/280 (70%), Gaps = 10/280 (4%)
Strand=Plus/Plus
Query 167143 TGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGG-TGCGAACTTTCTTACTGC 167198
||||||| ||||||| | || ||||| || | | ||| ||| || ||| | || ||
Sbjct 70184 TGGTATATTCATGGATTGGC---CAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGC 70239
Query 167199 GGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGA 167258
|||||| || || || || | | | |||||||| | | || ||||||||| |
Sbjct 70240 TGCAGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAA 70299
Query 167259 ATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCT 167318
| | ||||| ||||| | ||| ||| | || || || ||| ||||||| || ||
Sbjct 70300 AGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCT 70359
Query 167319 CCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCG-CCTGA 167377
|||||| || || | || || ||||||||| | | || |||||||||||||| |||
Sbjct 70360 CCACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGT 70419
Query 167378 TTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCC 167417
| | | ||||| || ||||| ||||| |||||||| ||
Sbjct 70420 GTAAT-TACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458
>seq1610
Length=34327
Score = 102 bits (112), Expect = 9e-17
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188
||||||||||||||| |||||||| |||| ||||||| ||| ||||||||||||||||||
Sbjct 16979 TCCTCAGTAGCTCAGTGGCAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 17038
Query 18189 CTACCTGGGGA 18199
|||| ||||||
Sbjct 17039 CTACTTGGGGA 17049
>seq1089
Length=80483
Score = 96.9 bits (106), Expect = 4e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188
||||||||||||||| || ||||| |||| ||||||| ||| ||||||||||||||||||
Sbjct 28795 TCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 28736
Query 18189 CTACCTGGGGA 18199
|||| ||||||
Sbjct 28735 CTACTTGGGGA 28725
>seq932
Length=92798
Score = 96.9 bits (106), Expect = 4e-15
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188
||||||||||||||| || ||||| |||| ||||||| ||| ||||||||||||||||||
Sbjct 62327 TCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 62268
Query 18189 CTACCTGGGGA 18199
|||| ||||||
Sbjct 62267 CTACTTGGGGA 62257
>seq407
Length=272206
Score = 96.9 bits (106), Expect = 4e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 167506 TTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATG 167565
|| ||||| ||||||| | |||||||| || || ||||| |||| | ||||||||||
Sbjct 61894 TTTCGATTTATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATG 61953
Query 167566 ATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTA 167625
||||| || || ||| | | || | || ||||| | ||| || |||||| || |
Sbjct 61954 ATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTC 62013
Query 167626 GAGAATACTTTGTATGAAGATGGTGA 167651
|| |||||||| | ||||||||||||
Sbjct 62014 GAAAATACTTTATTTGAAGATGGTGA 62039
>seq455
Length=14957
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187
|||||||||||||||| || ||||| ||| ||||||| || |||||||||||||||||
Sbjct 2206 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 2265
Query 18188 CCTACCTGGGGAG 18200
||||| |||||||
Sbjct 2266 CCTACTTGGGGAG 2278
>seq1533
Length=49096
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||
Sbjct 14977 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 15036
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
|| || |||||||| |||||||
Sbjct 15037 GGATCGAATCCTACTTGGGGAG 15058
>seq116
Length=395782
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 165982 GCAATTGGTCTACACTTCTATCCCATCTGGGAAGC--CG--CATCGCTTGACGAATGGCT 166037
|| |||||| | ||||| || || || |||||||| || | || |||| |||||| |
Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798
Query 166038 CTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTA 166097
| || |||||||||| |||| |||| | |||||| | |||| | | ||
Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858
Query 166098 CATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGC 166157
||||||||||||||||||||| || |||| | ||||||| || ||||| ||||||
Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918
>seq50
Length=863891
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187
|||||||||||||||| || ||||| ||| ||||||| || |||||||||||||||||
Sbjct 506950 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 507009
Query 18188 CCTACCTGGGGA 18199
||||| ||||||
Sbjct 507010 CCTACTTGGGGA 507021
>seq386
Length=98747
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186
||||||||||||||||| || ||||| ||||||||||| || |||| ||||||||||
Sbjct 18183 ATTCCTCAGTAGCTCAGTGGTTGAGCCGTCGACTGTTAACTGACTGGTTGTAGGTTCAAT 18242
Query 18187 TCCTACCTGGGGA 18199
|||||| ||||||
Sbjct 18243 TCCTACTTGGGGA 18255
>seq32
Length=728288
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187
|||||||||||||||| || ||||| ||| ||||||| || | |||||||||||||||
Sbjct 728174 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTAGTCGTAGGTTCAAAT 728115
Query 18188 CCTACCTGGGGA 18199
||||| ||||||
Sbjct 728114 CCTACTTGGGGA 728103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561186571406400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |