Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq194 206 3e-48 seq471 109 6e-19 seq1610 102 9e-17 seq1089 96.9 4e-15 seq932 96.9 4e-15 seq407 96.9 4e-15 seq455 91.5 2e-13 seq1533 89.7 6e-13 seq116 89.7 6e-13 seq50 89.7 6e-13 seq386 87.8 2e-12 seq32 86.0 7e-12 >seq194 Length=269275 Score = 206 bits (228), Expect = 3e-48 Identities = 225/299 (75%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 167500 GCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTT 167559 || || || |||||| ||||||| | |||||||| || || ||||| |||| |||||| Sbjct 236930 GCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATTT 236989 Query 167560 CATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTT 167619 ||||||||||| || || ||| | | || | || ||||| | ||| || ||||||| | Sbjct 236990 CATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGCT 237049 Query 167620 ACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGAT 167679 || || || |||||||| | |||||||||||| ||||| || || || || | Sbjct 237050 ACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAAC 237109 Query 167680 TCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATC 167739 | ||||| | ||||| ||||||||||||||||| || ||||| || ||||| || ||| Sbjct 237110 CCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATC 237169 Query 167740 TTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGT 167798 || || ||||||| || ||||| ||| | ||||||||||||||||| || || || Sbjct 237170 TTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 237228 Score = 96.9 bits (106), Expect = 4e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 167293 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT 167352 || || || ||| ||||||| || |||||||| || |||| || || ||||||||| | Sbjct 238034 GGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTAATAGGTTTCATGTTA 237975 Query 167353 CGACAGTTTGAACTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTC 167411 || || |||||||||||||| ||| || | ||||| || ||||| ||| | ||||| Sbjct 237974 CGTCAATTTGAACTTGCTCGATCTG-TTCAATTACGTCCTTATAATGCAATTACATTCTC 237916 Query 167412 TGGTCCTATTGCTGTCTTCGTT 167433 ||| || |||||| | || ||| Sbjct 237915 TGGCCCAATTGCTATTTTTGTT 237894 >seq471 Length=100806 Score = 109 bits (120), Expect = 6e-19 Identities = 196/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 167143 TGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGG-TGCGAACTTTCTTACTGC 167198 ||||||| ||||||| | || ||||| || | | ||| ||| || ||| | || || Sbjct 70184 TGGTATATTCATGGATTGGC---CAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGC 70239 Query 167199 GGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGA 167258 |||||| || || || || | | | |||||||| | | || ||||||||| | Sbjct 70240 TGCAGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAA 70299 Query 167259 ATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCT 167318 | | ||||| ||||| | ||| ||| | || || || ||| ||||||| || || Sbjct 70300 AGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCT 70359 Query 167319 CCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCG-CCTGA 167377 |||||| || || | || || ||||||||| | | || |||||||||||||| ||| Sbjct 70360 CCACGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGT 70419 Query 167378 TTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCC 167417 | | | ||||| || ||||| ||||| |||||||| || Sbjct 70420 GTAAT-TACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq1610 Length=34327 Score = 102 bits (112), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| |||||||| |||| ||||||| ||| |||||||||||||||||| Sbjct 16979 TCCTCAGTAGCTCAGTGGCAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 17038 Query 18189 CTACCTGGGGA 18199 |||| |||||| Sbjct 17039 CTACTTGGGGA 17049 >seq1089 Length=80483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| |||| ||||||| ||| |||||||||||||||||| Sbjct 28795 TCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 28736 Query 18189 CTACCTGGGGA 18199 |||| |||||| Sbjct 28735 CTACTTGGGGA 28725 >seq932 Length=92798 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| |||| ||||||| ||| |||||||||||||||||| Sbjct 62327 TCCTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGACTGGTCGTAGGTTCAAATC 62268 Query 18189 CTACCTGGGGA 18199 |||| |||||| Sbjct 62267 CTACTTGGGGA 62257 >seq407 Length=272206 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 167506 TTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATG 167565 || ||||| ||||||| | |||||||| || || ||||| |||| | |||||||||| Sbjct 61894 TTTCGATTTATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATG 61953 Query 167566 ATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTA 167625 ||||| || || ||| | | || | || ||||| | ||| || |||||| || | Sbjct 61954 ATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTC 62013 Query 167626 GAGAATACTTTGTATGAAGATGGTGA 167651 || |||||||| | |||||||||||| Sbjct 62014 GAAAATACTTTATTTGAAGATGGTGA 62039 >seq455 Length=14957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||||||| Sbjct 2206 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 2265 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 2266 CCTACTTGGGGAG 2278 >seq1533 Length=49096 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 14977 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 15036 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 || || |||||||| ||||||| Sbjct 15037 GGATCGAATCCTACTTGGGGAG 15058 >seq116 Length=395782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 165982 GCAATTGGTCTACACTTCTATCCCATCTGGGAAGC--CG--CATCGCTTGACGAATGGCT 166037 || |||||| | ||||| || || || |||||||| || | || |||| |||||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 166038 CTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTA 166097 | || |||||||||| |||| |||| | |||||| | |||| | | || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 166098 CATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGC 166157 ||||||||||||||||||||| || |||| | ||||||| || ||||| |||||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 >seq50 Length=863891 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||||||| Sbjct 506950 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 507009 Query 18188 CCTACCTGGGGA 18199 ||||| |||||| Sbjct 507010 CCTACTTGGGGA 507021 >seq386 Length=98747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 ||||||||||||||||| || ||||| ||||||||||| || |||| |||||||||| Sbjct 18183 ATTCCTCAGTAGCTCAGTGGTTGAGCCGTCGACTGTTAACTGACTGGTTGTAGGTTCAAT 18242 Query 18187 TCCTACCTGGGGA 18199 |||||| |||||| Sbjct 18243 TCCTACTTGGGGA 18255 >seq32 Length=728288 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || | ||||||||||||||| Sbjct 728174 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTAGTCGTAGGTTCAAAT 728115 Query 18188 CCTACCTGGGGA 18199 ||||| |||||| Sbjct 728114 CCTACTTGGGGA 728103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561186571406400