Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq194 244 1e-59 seq116 107 2e-18 seq1610 102 9e-17 seq407 102 9e-17 seq1089 96.9 4e-15 seq932 96.9 4e-15 seq60 91.5 2e-13 seq455 89.7 6e-13 seq1533 87.8 2e-12 seq50 87.8 2e-12 seq32 84.2 3e-11 >seq194 Length=269275 Score = 244 bits (270), Expect = 1e-59 Identities = 247/320 (77%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 66799 AACTTGTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTAT 66858 ||||| |||| | ||| | || || ||||| |||||||||||||| ||||| | |||| Sbjct 237247 AACTT-TCCATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTAT 237189 Query 66859 TGCTAAACGCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAG 66918 | ||| |||| |||||||| || ||||| |||||||| || ||||||||||| |||| Sbjct 237188 TAGAAAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTAACCATTGAATAAG 237129 Query 66919 TTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCAT 66978 ||||||| ||||||| | || || || ||| || ||||| |||||||||||| Sbjct 237128 TTTCTTCGGCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAA 237069 Query 66979 ACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATAC 67038 | | |||||| || || ||| |||||||||| ||| | ||||| || | || | | || Sbjct 237068 ATAAAGTATTTTCGACAGTAGCACCATGAATAGCACATAGCAAAGCCGCCCCTAATACAC 237009 Query 67039 CTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGA 67098 | || || |||||||||||||| |||||||| ||||| ||||| |||||||| | |||| Sbjct 237008 CGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGAAAAAAGA 236949 Query 67099 GAAGGAATCGAAAGATTGCT 67118 | | ||||||||| || ||| Sbjct 236948 GGATGAATCGAAATATAGCT 236929 >seq116 Length=395782 Score = 107 bits (118), Expect = 2e-18 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 68435 ATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCA 68494 |||||||| |||||||| ||||||| | ||| | ||||||||| ||||| |||| Sbjct 22920 ATGCAACAGCAATCCAAGGTTGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCA 22861 Query 68495 TGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGT 68554 |||| | | ||||| | |||||| | | | |||| ||||||||||||||| Sbjct 22860 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCACAAGGACCACCATTGT 22801 Query 68555 ACAACCACTCATCA----AGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATT 68610 ||||| |||||| | || | |||||||| || || |||||||| | |||||| Sbjct 22800 GTAACCATTCATCAACGGACGGACGTAGCTTCCCATATTGGGTAAAAGTGCAAACCAATA 22741 Query 68611 GCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCA 68670 || |||||| || || || | ||||| || || || || || || || || ||| Sbjct 22740 GCTGCAGAACTATAAATAATGACATCGGAAATAATATTATTTCCGTAAAGTAGAGATCCA 22681 Query 68671 GC 68672 || Sbjct 22680 GC 22679 >seq1610 Length=34327 Score = 102 bits (112), Expect = 9e-17 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 35512 TCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTGA 35571 |||||| |||||||||||||||||||||| ||| ||||||| |||| |||||||| |||| Sbjct 17049 TCCCCAAGTAGGATTTGAACCTACGACCAGTCGGTTAACAGCCGATCGCTCTGCCACTGA 16990 Query 35572 GCTACTGAGGA 35582 ||||||||||| Sbjct 16989 GCTACTGAGGA 16979 >seq407 Length=272206 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025 |||||||||||| | | |||||| || | || |||||| ||| ||| | ||||| || Sbjct 62039 TCACCATCTTCAAATAAAGTATTTTCGAGAATAGCACCATYAATAGCACAGAGCAAAGCC 61980 Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAAT 67085 | || | | ||| || || |||||||||||||| | ||||| ||||| ||||| ||| Sbjct 61979 GCCCCTAATACACCGGCAACTCCCATCATATGAAATAGTTTCAACGTCCAATTATGAAAT 61920 Query 67086 CCTTGTAGGAAGAGAAGGAATCGAAA 67111 ||||| | ||||| | |||||||| Sbjct 61919 CCTTGAAAAAAGAGGATAAATCGAAA 61894 >seq1089 Length=80483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 35512 TCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTGA 35571 |||||| |||||||||||||||||||||| ||| ||||||| |||| ||||| || |||| Sbjct 28725 TCCCCAAGTAGGATTTGAACCTACGACCAGTCGGTTAACAGCCGATCGCTCTACCACTGA 28784 Query 35572 GCTACTGAGGA 35582 ||||||||||| Sbjct 28785 GCTACTGAGGA 28795 >seq932 Length=92798 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 35512 TCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTGA 35571 |||||| |||||||||||||||||||||| ||| ||||||| |||| ||||| || |||| Sbjct 62257 TCCCCAAGTAGGATTTGAACCTACGACCAGTCGGTTAACAGCCGATCGCTCTACCACTGA 62316 Query 35572 GCTACTGAGGA 35582 ||||||||||| Sbjct 62317 GCTACTGAGGA 62327 >seq60 Length=520799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 66662 CCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGG 66721 ||| ||||||| ||| || || || ||||| || || |||||||| ||||| || || || Sbjct 267454 CCAAGCACGAATACCCTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGG 267513 Query 66722 GTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAG 66781 ||||||||||| | || | || | || |||||||||||||| | ||| |||| || Sbjct 267514 ATCTTCTGCTGCACGAATTTYCTGAKAAACGAAGTCATAAGCACGTAAGTTCGGAGCTAG 267573 Query 66782 ACC 66784 || Sbjct 267574 GCC 267576 >seq455 Length=14957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||||||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 2278 CTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 2219 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 2218 AGCTACTGAGGA 2207 >seq1533 Length=49096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| || ||||||||||||| ||||||| ||| || Sbjct 15066 AATCAAAT--CTCCCCAAGTAGGATTCGATCCTACGACCAATCAGTTAACAGCCGACCGC 15009 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 15008 TCTACCACTGAGCTACTGAGGA 14987 >seq50 Length=863891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 35512 TCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTGA 35571 |||||| |||||||||||||||||||||| || ||||||| ||| ||||| || |||| Sbjct 507021 TCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGA 506962 Query 35572 GCTACTGAGGA 35582 ||||||||||| Sbjct 506961 GCTACTGAGGA 506951 >seq32 Length=728288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 35512 TCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTGA 35571 |||||| |||||||||||||||||||| | || ||||||| ||| ||||| || |||| Sbjct 728103 TCCCCAAGTAGGATTTGAACCTACGACTAGTCAGTTAACAGCCGACCGCTCTACCACTGA 728162 Query 35572 GCTACTGAGGA 35582 ||||||||||| Sbjct 728163 GCTACTGAGGA 728173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571991788645920