Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1470 120 5e-22 seq139 114 2e-20 seq187 107 3e-18 seq1646 105 1e-17 seq176 105 1e-17 seq771 91.5 3e-13 seq114 89.7 9e-13 seq260 87.8 3e-12 >seq1470 Length=49555 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||| || || |||| ||||| ||| ||| || || || Sbjct 30851 ATTTGCATACCACCTCTCAAACGTAGGACCAAGTGCAAGGTACTCTCCTTCTGGATGTTG 30792 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | | ||| || | |||||||||||||| || | ||||| || Sbjct 30791 TAGTCGGCAAGGGTACGACCATCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGG 30732 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||| || |||||||| ||||| | || | || ||| || ||||| Sbjct 30731 TCTGGAGGGATTCCCTCCTTATCTTGGATTTTTGCCTTAACGTTATCAATGGTGTCGGAG 30672 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || ||||| || || || || || || || || ||||| || ||||| Sbjct 30671 CTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 30616 >seq139 Length=432677 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | || || |||||||| | || | || || ||| || Sbjct 178551 ATTTGCATTCCACCTCTAAGACGGAGCACCAGATGAAGGGTTGATTCCTTCTGAATGTTG 178610 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || |||| ||| || | || ||||| ||||| |||| ||||| ||| Sbjct 178611 TAGTCAGCTAGGGTTCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATTAGCCTCTGCTGA 178670 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || | || || || ||||| ||||||||||||| ||| | | || | |||||| | | Sbjct 178671 TCTGTCGGGATGCCCTCTTTGTCTTGTATTTTGGATTTGACACTTTCGACAGTATCAGGA 178730 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || |||||||| || || || || ||||| |||||||| ||||| Sbjct 178731 CTTTCCACATCGAGGGTTATAGTCTTTCCGGTAAGGGTTTTGACAAATATCTGCAT 178786 >seq187 Length=363338 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| || || |||| || || ||| || || ||||| Sbjct 22443 ATTTGCATGCCACCTCTCAAACGTAGGACCAAGTGTAAGGTACTTTCCTTCTGGATATTG 22502 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || ||| | | || || | |||||||||||||| || | ||||| ||| Sbjct 22503 TAGTCAGCTAGCGTACGACCGTCCTCGAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGA 22562 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || || || || |||| ||| | ||| || || ||||| Sbjct 22563 TCCGGGGGAATCCCTTCCTTGTCCTGAATCTTGGCTTTAACATTGTCTATGGTGTCGGAG 22622 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| || || | || || || || || || ||||| || |||||||| |||||| Sbjct 22623 CTCTCCACCTCCAAGGTGATGGTCTTTCCAGTAAGCGTCTTGACAAATATCTGCATT 22679 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | || || ||||| || | || | ||| || ||||| ||||| Sbjct 42282 ATGCCACCCCTGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGTATATTGTAGTCA 42341 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | || || | ||||| |||||||| || | ||||| || || ||| Sbjct 42342 GCTAGGGTGCGACCGTCCTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGA 42401 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || ||||||| || | || || || ||||| ||| Sbjct 42402 GGAATTCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCG 42461 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || || || ||||||||||| Sbjct 42462 ACCTCGAGAGTAATGGTCTTGCCGGTGAGTGTCTTGACGAATATTTGCAT 42511 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || || |||| || | |||| ||| || ||||| |||||| Sbjct 30115 ATGCCACCTCTCAAACGTAGGACCAAGTGTAGGGTAGACTCCTTCTGGATATTGTAGTCG 30174 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | || || | |||||||| || || || | ||||| || || || Sbjct 30175 GCAAGGGTACGACCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGGTCTGGG 30234 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| ||||| | || | ||| || || || || || Sbjct 30235 GGAATTCCCTCCTTGTCTTGAATTTTCGCCTTGACATTGTCGATGGTGTCAGAGCTTTCG 30294 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || ||||| || || || || ||||| || ||||| Sbjct 30295 ACTTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCAT 30344 >seq1646 Length=84127 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||| || || |||| || | || ||| || ||||| Sbjct 62090 ATTTGCATACCACCTCTCAAACGTAGGACCAAGTGTAGGGTGCTCTCCTTCTGGATATTG 62149 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| || || | | ||| ||||| || ||||||||||| || | ||||| || Sbjct 62150 TAGTCGGCTAGGGTACGACCATCTTCTAACTGCTTTCCGGCAAAGATGAGCCTCTGCTGG 62209 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || |||||||| || ||||| | || | || || |||||||| Sbjct 62210 TCTGGGGGAATACCCTCTTTATCCTGAATTTTAGCCTTGACGTTGTCGATGGTATCGGAG 62269 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || || || || || || || ||||| || ||||| Sbjct 62270 CTTTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 62325 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || ||||| || | || | ||| || ||||| ||||| Sbjct 61868 ATACCACCTCTGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTTTGGATATTGTAGTCA 61927 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | || || | ||||| |||||||| || | ||||| || || || Sbjct 61928 GCTAGGGTGCGGCCGTCTTCGAGCTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGT 61987 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| ||||| | || | ||| ||| || || || ||| Sbjct 61988 GGGATACCCTCTTTGTCTTGGATTTTCGCCTTGACATTGTCAATGGTGTCAGAGCTTTCA 62047 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || || || || || || || |||||||| |||||||| Sbjct 62048 ACTTCCAAGGTAATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 62097 >seq176 Length=237547 Score = 105 bits (116), Expect = 1e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 193154 CAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAA 193213 || |||||| || | |||||| | || |||||| || || ||| || ||| || | Sbjct 212889 CACATGCAAAGTGGACTCTTTTTGTACATCATAGTCAGACAAGGTTTTACCATCTTCAAG 212948 Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||||||||| ||| | |||| ||||||||| || | || ||||||| ||| |||||||| Sbjct 212949 TTGTTTTCCTGCATATATTAGTCTCTGTTGGTCTGTTGGAATTCCTTGTTTTTCTTGTAT 213008 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGT 193321 ||||| |||||| ||| || || || |||| | || ||||| || Sbjct 213009 TTTGGATTTTATTTTTGTTATTGTGTCTGAAGGGTTTACATCTAGGGT 213056 >seq771 Length=161796 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || || |||| || | || | ||| || ||||||||||| Sbjct 43271 ATACCACCTCTCAAACGTAGGACCAAGTGTAGGGTGGACTCCTTTTGGATATTATAGTCA 43212 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | || || | |||||||||||||| || | ||||| || || ||| Sbjct 43211 GCAAGGGTACGACTGTCCTCAAGCTGTTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGA 43152 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || |||| || | || || || || || ||| Sbjct 43151 GGGATACCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCTGAGCTCTCG 43092 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || || || ||||| || ||||| Sbjct 43091 ACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTAACAAAGATCTGCAT 43042 >seq114 Length=372266 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | | ||| |||||||| | ||| | |||||| || || ||||| | Sbjct 349199 CCACCTCTGAGCCTAAGAACCAGATGAAGTGTCGACTCTTTTTGGATGTTGTAGTCTGCA 349140 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | |||| ||| |||| ||||||||| || ||||| || || ||||||||||| || Sbjct 349139 AGTGTTCGGCCATCTTCTAGTTGTTTTCCAGCGAAAATCAACCTTTGTTGATCAGGTGGA 349080 Query 193254 ATTCCTTCTTTATCTTG 193270 || ||||||||||| || Sbjct 349079 ATCCCTTCTTTATCCTG 349063 >seq260 Length=279698 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| || || || |||| || | ||| || || || ||| Sbjct 162539 ATTTGCATCCCACCTCTTAAACGTAGGACCAAGTGTAGGGTACTTTCCTTCTGGATGTTA 162598 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | | ||| || | |||||||| || || || | ||| || || Sbjct 162599 TAGTCGGCAAGGGTACGACCATCCTCGAGCTGTTTTCCAGCGAAGATGAGTCTTTGCTGG 162658 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||| ||||||||||| ||||| | || | || || || || || Sbjct 162659 TCTGGAGGGATTCCCTCTTTATCTTGGATTTTTGCCTTAACGTTGTCGATGGTGTCTGAG 162718 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || ||||| || || || || || || || || ||||| || ||||| Sbjct 162719 CTCTCGACCTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 162774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899555932825920