Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1083 100 4e-16 seq187 91.5 2e-13 seq1646 86.0 9e-12 seq139 86.0 9e-12 >seq1083 Length=90715 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || |||||||| || || | || || |||| || Sbjct 36575 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAAACCATCACCCTCGAGGTGGAAGGCTCC 36516 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| |||||||| || ||||| |||| || ||||| || Sbjct 36515 GACACAATCGACAACGTGAAATCGAAAATACAGGACAAAGAGTGCATCCCGCCAGATCAG 36456 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| || || || ||||| ||| | |||||| | || || || Sbjct 36455 CAAAGACTCATCTTTGCTGGAAAACAACTCGAGGATGGTCGCACTTTAGCCGACTACAAC 36396 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || ||| | || || ||| | ||| | | |||||||||||| Sbjct 36395 ATACAGAAGGAGTCTACTCTACATCTCGTGCTCCGTTTAAGAGGCGGT 36348 >seq187 Length=363338 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || || ||||| || || || || || ||| Sbjct 21766 ATGCAGATTTTTGTCAAGACCCTTACCGGGAAGACTATCACCTTGGAGGTGGAGAGCTCT 21707 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||||| ||||| || ||||| || || || || || || || Sbjct 21706 GATACGATCGATAACGTGAAGGCGAAAATTCAGGATAAGGAGGGTATTCCCCCGGACCAG 21647 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| |||||| | |||||| || ||||| | ||||||||| Sbjct 21646 CAGAGGTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGGAGGACTTTGGCCGATTATAAT 21587 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 21586 ATCCAGAAAGAGTCTACTCTTCA 21564 >seq1646 Length=84127 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || ||||| || ||||| || ||||| ||| ||| Sbjct 62097 ATGCAAATCTTTGTAAAGACTCTCACCGGAAAGACCATTACCTTGGAAGTTGAAAGCTCT 62038 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||| || || || ||||| || Sbjct 62037 GACACCATTGACAATGTCAAGGCGAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 61978 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || | || | ||||||||| ||||||||||| Sbjct 61977 CAGAGGCTCATCTTTGCCGGTAAACAGCTCGAAGA 61943 >seq139 Length=432677 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | || ||||| ||||| || | || || ||| | || Sbjct 178786 ATGCAGATATTTGTCAAAACCCTTACCGGAAAGACTATAACCCTCGATGTGGAAAGTCCT 178727 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| | | || || ||| ||||||||||| ||||| ||||| || |||| || Sbjct 178726 GATACTGTCGAAAGTGTCAAATCCAAAATACAAGACAAAGAGGGCATCCCGACAGATCAG 178667 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||||||||| ||| | |||| || | || || || Sbjct 178666 CAGAGGCTAATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGAACCCTAGCTGACTACAAC 178607 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || || | || |||||| | ||| Sbjct 178606 ATTCAGAAGGAATCAACCCTTCATCTGGTG 178577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731791896609600