Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq139 118 2e-21 seq176 98.7 2e-15 seq771 87.8 3e-12 seq212 86.0 1e-11 seq1083 84.2 4e-11 >seq139 Length=432677 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 || ||||| || ||||| | ||| | |||||| ||| || || || | ||||| ||| Sbjct 177657 AGGCGTAAAACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCTAAAGTCCGT 177716 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | || ||||| |||||||||||||| || | ||||| ||||| ||||| || || || Sbjct 177717 CCATCTTCCAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCC 177776 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 |||||||| || ||| || |||||| ||||| ||||| || || || | || Sbjct 177777 TTATCTTGAATCTTAGCCTTCACATTATCAATAGTGTCTGAACTCTCCACCTCCAATGTG 177836 Query 172032 ATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || |||| || || ||||| Sbjct 177837 ATCGTTTTCCCCGTCAACGTCTTAACAAAGATTTGCAT 177874 >seq176 Length=237547 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||| ||| | ||| | | ||| ||||| | |||||| | || | Sbjct 212860 TTCTTATCACCACCTTTAATCCTTAACAACACATGCAAAGTGGACTCTTTTTGTACATCA 212919 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || || | | | || || | |||||| || ||| | |||| |||||||||| Sbjct 212920 TAGTCAGACAAGGTTTTACCATCTTCAAGTTGTTTTCCTGCATATATTAGTCTCTGTTGG 212979 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || | ||| ||||||| ||| ||||||||||| ||||| || ||||| || ||||| Sbjct 212980 TCTGTTGGAATTCCTTGTTTTTCTTGTATTTTGGATTTTATTTTTGTTATTGTGTCTGAA 213039 Query 172014 GATTCTACTTCTAGAGT 172030 | | ||| ||||| || Sbjct 213040 GGGTTTACATCTAGGGT 213056 >seq771 Length=161796 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | ||| || | || | |||| ||||| |||||| || |||||||| Sbjct 43728 AAGACCACCACGAAGACGGAGAACAAGGTGTAGAGTAGACTCTTTCTGGATGTTATAATC 43669 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| | | | ||||| ||||| |||||||| || || ||||| |||||||| Sbjct 43668 GGCCAAAGTCCTCCCATATTCCAACTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGG 43609 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || || || || || || | ||| || || || || || Sbjct 43608 GGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGATGTTATCAATGGTGTCGGAGCTCTC 43549 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || || || | || || | |||||||||||| Sbjct 43548 GACCTCCAAAGTGATGGTCTTCCCTGTGAGGGTCTTGACGAATATCTGCAT 43498 >seq212 Length=467306 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 ||||| ||||| || || ||| ||| || ||| |||||||| |||||| || || Sbjct 58875 CCTTCCTTATCCTGGATCTTAGCTTTAACGTTATCAATAGTATCACTCGATTCGACCTCG 58816 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| |||||||| ||||||| ||||| | ||| ||||||||||| Sbjct 58815 AGAGTGATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATTTT 58769 >seq1083 Length=90715 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/230 (68%), Gaps = 13/230 (6%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | |||||| ||| |||||| || |||||||| Sbjct 35902 ATACCACCACGTAGACGAAGCACCAGGTGTAAA-TAGACTCTTTCTGGATGTTATAATCC 35960 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | || || | |||||||||||||||||| | || |||||||| || Sbjct 35961 ACAAGAGTGCGACCATCCTCTAGTTGTTTACCAGCAAAAATAAGCCTTTGTTGGTCCGGC 36020 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || |||||||| || || |||||| ||||||||||| | | Sbjct 36021 GGAATACCCTCCTTGTCTTGTATCTTTGCCTTAACATTATCGATAGTATCTGA-GCT--- 36076 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| ||||| || || | || || ||||| Sbjct 36077 --------GGTAATCGTTTTACCCGTTAAAGTCTTGACAAAGATTTGCAT 36118 Score = 84.2 bits (92), Expect = 4e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || | || | ||| | |||| ||| || ||| |||||||| Sbjct 36117 ATACCACCACGTAAACGAAGCACAAGATGAAGCGTAGACTCCTTTTGAATGGTATAATCT 36176 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCT-GTTGGTCAGG 171958 | | || || | || || | |||||||| ||||| || | || | |||| || || Sbjct 36177 GCGAGAGTACGACCATCCTCGAGCTGTTTACCCGCAAAGATAAGCCTTTTGTTGATCTGG 36236 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || |||| |||||| ||||| || | || || ||| || || || || ||| Sbjct 36237 CGGGATCCCTTTTTTATCCTGTATCTTCGTCTTCACGTTATCAATTGTGTCAGAGTTTTC 36296 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||||||||| ||||| | ||||| | || || ||||| Sbjct 36297 GACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 36347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905036932864800