Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1254 98.7 3e-15 seq132 98.7 3e-15 seq41 87.8 5e-12 seq22 87.8 5e-12 seq1305 86.0 2e-11 seq235 86.0 2e-11 >seq1254 Length=70693 Score = 98.7 bits (108), Expect = 3e-15 Identities = 87/108 (81%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 156046 AACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| || |||||||||||| ||||| ||||| |||||||| | |||||| |||| Sbjct 37279 AATTACCTTTTCTCTTGCCACCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACAC 37220 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 | ||| ||||| |||||||| || || ||||| ||||| ||||||| Sbjct 37219 GCAACATGGGAATTATACCATTAGATGTCCCATTTGTTCCACGAATAT 37172 >seq132 Length=337084 Score = 98.7 bits (108), Expect = 3e-15 Identities = 232/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT--TTGCTT-AAATCCA 288945 ||||| || | || |||||||| | ||||| ||| |||| || ||| ||| || Sbjct 93207 ATATCTGCACGATTAGTTGCTGCAATTACAATGATAC---CGGTGTTTCCTTCAAAACCG 93263 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || |||| ||| |||||||| || ||||||||||| ||| |||| | | Sbjct 93264 TCCATTTCAGTCAAAAGTTGGTTAAGTGTCTGCTCCCTTTCATCGTTT---CCTCCTCCA 93320 Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065 | || | | || ||| | |||||||| ||||||||||||| || | | ||| Sbjct 93321 --ATCCCAGTTCCT-CTTGACCTCCCAACAGCGTCAATTTCGTCAACAAACACAATACAT 93377 Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125 || | || | | || || ||| | || | || | || || |||| ||||||| Sbjct 93378 GGTGCGTTCTCCTTAGCCTTTTTAAAAAGATCACGAACTCTAGAAGCACCAACACCAACA 93437 Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGC 289184 |||| || ||||| || ||| | || | | || | ||| | ||| ||||| ||||| Sbjct 93438 AACATCTCAACAAACTCTGAACCAGA-AATGGAGAAGAACGGCACACCAGCTTCTCCTGC 93496 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | |||| | |||| ||| ||||| || ||||| || || || Sbjct 93497 AATTGCCTTTGCCAAAAGAGTCTTCCCAGTTCCTGGGGGACC 93538 >seq41 Length=618814 Score = 87.8 bits (96), Expect = 5e-12 Identities = 200/297 (67%), Gaps = 17/297 (6%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 || ||||||||||| |||| ||| ||||| ||| ||| | ||| ||| | Sbjct 213802 TGGTTAAGTGTTTGGTCCCGTTCGTCATT-GAAACTCCT-----ACC----TCG-----T 213758 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| ||||||||||||| ||| || || || || | | | |||||||||||||| || Sbjct 213757 TTTCCCCCAACAGCATCAAGTTCATCTATAAATATAATAGAAGGAGAATTTTGTCTTGCG 213698 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||| | ||||| | | | ||||| ||| ||| | | || ||||||||| Sbjct 213697 ACCTTAAAAAGATCTCTAATTCTCGCAGCTCCTCTACCGACAAAAAGCTCAACAAATTCA 213638 Query 289144 GAAGCGGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || || ||| |||| || | ||| ||||| || || ||||| | || || | Sbjct 213637 CTTGCAGAAACTGTGAA-AAAGGGTACTCCGGCTTCCCCAGCCACTGCTCGGGCGAGTAA 213579 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || ||||| || || ||||| ||| ||||||| || || |||| ||||| || Sbjct 213578 CGTTTTACCCGTCCCTGGTGGGCCCACTAATAGTACCCCTCGCGGTAACTTTGCGCC 213522 >seq22 Length=845612 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 251836 AGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTC 251895 |||||| | || ||||||||| |||||||||||| || || | ||||| || ||| | Sbjct 329991 AGTTGGCCAATGGTCATACGAGAGGGAATAGCATGAGGGTTAACAATGATATCAGGTGTT 330050 Query 251896 AGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCC 251952 | || ||| |||| | ||||||||| || | | || | || |||||| || ||| Sbjct 330051 ACCCCCTCAACAGTCCACGGCATATCC---TCTTGAGTATACGTCATTCCAACCGTACCC 330107 Query 251953 TTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || || | || ||||||||||||||||| Sbjct 330108 TTCTGCCCATGTCTCGAGCTGAACTTATCACCAAT 330142 >seq1305 Length=68372 Score = 86.0 bits (94), Expect = 2e-11 Identities = 252/380 (66%), Gaps = 10/380 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | ||| || | ||| | ||||| || | ||| || ||| Sbjct 45362 CTATCAAATCTTCCTGGTCTTAATAACGCAGAGTCAAGAATATCTGCACGGTTAGTAGCT 45421 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTA-AATCCATCCATACTTGTTAAAATTTGATT 288968 || | ||||| || | | |||| ||| || || ||||| ||||| | ||| || Sbjct 45422 GCAATTACAATAAC-GCCTGTGTTTCCTTCGAAACCGTCCATTTCAGTTAAGAGTTGGTT 45480 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 ||| || ||||| || ||||||||| |||| ||| | | | ||| || | || Sbjct 45481 AAGAGTCTGTTCTCTCTCATCATTTCCTCCTCC--AATTCC---AGTTCCTCGTTGTCTT 45535 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||||||||| ||||| |||| || | | ||| |||| ||| | | || || Sbjct 45536 -CCAACAGCATCGATTTCATCAACAAATACAATACATGGAGCATTCTCCTTTGCTTTTTT 45594 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | || | || || || || || | ||||||| |||| || ||||| || ||| | Sbjct 45595 AAAAAGGTCACGAACTCGAGAAGCACCGACACCAACAAACATCTCAACAAACTCCGAACC 45654 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | | || | || | ||| ||||| || || | ||| | |||| || |||| Sbjct 45655 AGAGA-TAGAGAAAAAAGGAACACCAGCTTCACCAGCAATCGCCTTTGCCAAGAGAGTCT 45713 Query 289208 TACCTGTTCCAGGTGGTCCC 289227 | || ||||| || || ||| Sbjct 45714 TTCCGGTTCCTGGGGGACCC 45733 >seq235 Length=422759 Score = 86.0 bits (94), Expect = 2e-11 Identities = 213/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||| ||||||||||||||||| | | |||| | || || || | | Sbjct 32581 CCAATTGCATCTATTTCGTCAATGAAAATAATGCTAGGAGCACACTGCCTTGCTTCTTGA 32640 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || | ||| || | |||| |||| |||||| ||||||| | ||| || || | Sbjct 32641 AACAAATTTCTCACTCTTGATGGGCCAACTCCAACAAACATTTCCATAAAATCTGACCCT 32700 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | || | ||| | ||| || || || | || |||||||| || Sbjct 32701 GA-AATGGACAAAAAGGGAACACCAGATTCACCAGCAGTGGCTTTAGCAAGAAGTGTTTT 32759 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 || || ||||||||||| | | ||| | || || || | ||| || |||| || || Sbjct 32760 CCCCGTCCCAGGTGGTCCTACAAGAAGAGCCCCTTTAGGGATTTTGGCACCCA--AGTCT 32817 Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||| || | ||| | || | || | |||| |||| | ||| | ||| |||||| Sbjct 32818 TCATACTTTTTGGGGTTTTTAAGGAAGTGAACAAATTCCATTATTTCTTGTTTCGCCTCA 32877 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 32878 TCACACCCAGCTACATC 32894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471652482302772