Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq194 208 8e-49 seq471 125 8e-24 seq60 98.7 1e-15 seq116 89.7 6e-13 seq407 86.0 7e-12 >seq194 Length=269275 Score = 208 bits (230), Expect = 8e-49 Identities = 243/327 (74%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 159767 CTTTGGGGTGGCA-GCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGA 159825 |||||| || ||| || || ||| ||||| | | || ||||||||||||| || |||| Sbjct 236916 CTTTGGTGTAGCAAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGA 236975 Query 159826 CGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTG 159885 |||| || || || ||||||||||||||||| ||| || |||| | || | || ||| Sbjct 236976 CGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTG 237035 Query 159886 CCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCT 159945 | || ||||| | |||||| || || || | | ||||||||| || |||||||| | Sbjct 237036 CTATTCATGGTGCTACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 237095 Query 159946 TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCT 160005 | || ||| | ||||||||| || || ||||| || ||||| || || ||||||| Sbjct 237096 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 237155 Query 160006 TCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGT 160065 | ||||| || ||||| || |||| |||||||| || || ||| | |||||||| |||| Sbjct 237156 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 237215 Query 160066 TGTTTGTGCCTGTTATGGGTCTTTGGA 160092 | ||||| || || | ||| | |||| Sbjct 237216 TATTTGTACCAGTAACCGGTTTATGGA 237242 Score = 122 bits (134), Expect = 1e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 159558 CGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTA 159617 || ||||| ||| || || | |||| |||||| || ||||||||||| || | ||| Sbjct 238049 CGTTGGTGTCAATCGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTTGGACTA 237990 Query 159618 ATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGTCCTTACAA 159676 || ||||||||| | ||||| |||||||| || || ||| || | |||||||| || Sbjct 237989 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTACGTCCTTATAA 237931 Query 159677 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATT 159736 ||| ||| | |||||||| || |||||| ||||||| | ||| | || || ||| | Sbjct 237930 TGCAATTACATTCTCTGGCCCAATTGCTATTTTTGTTTCTGCATTCTTGATTTATCCACT 237871 Query 159737 GGGTCAGTCCAGTTGGTTTTT 159757 ||||||| |||||||||| Sbjct 237870 AAGTCAGTCGGGTTGGTTTTT 237850 >seq471 Length=100806 Score = 125 bits (138), Expect = 8e-24 Identities = 197/277 (71%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 159423 TGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGC 159481 ||||| | || || | || ||||||||| | | ||| ||| || ||| | || || || Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGC-AATTTTTTAACGGCTGC 70242 Query 159482 TGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 159541 || || | ||||||| | | | | |||||| | | |||| ||||||||| | | Sbjct 70243 AGTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGC 70302 Query 159542 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCA 159601 || || |||| || ||||| ||| | || || | |||| |||||| || ||||| Sbjct 70303 ACAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCA 70362 Query 159602 CGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTG 159660 |||||| |||| ||||| ||||||||| | |||| |||||||| || || ||| | Sbjct 70363 CGGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCGATCTGTGTA 70422 Query 159661 GTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCC 159697 | | |||||||| ||||| ||||| |||||||| || Sbjct 70423 AT-TACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq60 Length=520799 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 160113 GGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAA 160172 ||||| |||| || | |||||||| || ||||| ||| | || | ||||||||| Sbjct 267576 GGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAATTCGTGCAGCAGAA 267517 Query 160173 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCA 160232 ||||| ||||||||||| |||||||||||||| || || || ||||| || | ||||| Sbjct 267516 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCT 267457 Query 160233 TGG 160235 ||| Sbjct 267456 TGG 267454 >seq116 Length=395782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 157793 GCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC--CG--CATCACTTGATGAGTGGCT 157848 || |||||| | ||||| || || || |||||||| || | || ||||||| ||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 157849 GTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATA 157908 | || |||||||||| |||| | || | |||||| | ||||| | | || Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 157909 CATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGC 157968 |||||| ||||||||||||||| | |||||| ||||||| || ||||| ||| || Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGATTGCTGTTGC 22918 Query 157969 AT 157970 || Sbjct 22919 AT 22920 >seq407 Length=272206 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 159805 TTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATAC 159864 ||||||||||||| || |||||||| || | || ||||||||||||||||| ||| || Sbjct 61913 TTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATGATGGGAGTTGCCGGTGTAT 61972 Query 159865 TAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAG 159924 |||| | || | ||| |||| || |||| | || | | || || || | | ||||| Sbjct 61973 TAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTCGAAAATACTTTATTTGAAG 62032 Query 159925 ATGGAGA 159931 |||| || Sbjct 62033 ATGGTGA 62039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548314380421920