Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq194 246 3e-60 seq471 152 6e-32 seq116 123 3e-23 seq407 111 2e-19 seq60 102 9e-17 >seq194 Length=269275 Score = 246 bits (272), Expect = 3e-60 Identities = 243/314 (77%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 152844 AGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTT 152903 ||| || || |||||| | ||||| |||||||||| || || ||||| ||||| || || Sbjct 236929 AGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATT 236988 Query 152904 TCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGT 152963 |||||||||||| ||||| ||| | || || | ||| ||||| | ||| |||||||||| Sbjct 236989 TCATATGATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTATGTGCTATTCATGGTGC 237048 Query 152964 TACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGA 153023 ||| || || |||||||| | | |||||||||| ||||| || ||| ||||| | Sbjct 237049 TACTGTCGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 237108 Query 153024 CAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGAT 153083 | ||||||| ||||| || ||||| |||||||| |||||||| || |||||||| || Sbjct 237109 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAAT 237168 Query 153084 ATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGT 153143 ||||| |||||||| |||||||| ||| | |||||||||||| | |||||||| || Sbjct 237169 CTTTGGGGTTGCTTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 237228 Query 153144 TATGGGTCTTTGGA 153157 | ||| | |||| Sbjct 237229 AACCGGTTTATGGA 237242 >seq471 Length=100806 Score = 152 bits (168), Expect = 6e-32 Identities = 202/277 (73%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 152488 TGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCA 152547 ||||||| ||| || ||||| ||||||||| ||| |||| || ||| | || || ||| Sbjct 70184 TGGTATATTCATGGATTGGCCAGTTCCTATTTGGTGGGCTGCAATTTTTTAACGGCTGCA 70243 Query 152548 GTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCT 152607 ||||||| || || || | | | |||||| | || | |||||||||||| | || Sbjct 70244 GTTTCTATGCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTCTGGGGTCCTAAAGCA 70303 Query 152608 CAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 152667 ||||| ||||| | ||| ||| | || || || ||| ||||||| || |||||| Sbjct 70304 CAAGGAGATTTTACTCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCAC 70363 Query 152668 GGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGT 152727 || ||||||| ||||| ||||||||| | | || |||||||| || || || | || Sbjct 70364 GGTGCTTTCGGACTAATAGGTTTCATGTTATGTCAATTTGAACTTGCTCG-ATC-TGTGT 70421 Query 152728 A--TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 152762 | | ||||| || ||||| ||||| |||||||| || Sbjct 70422 AATTACGTCCTTATAATGCGATTGCATTCTCTGGCCC 70458 >seq116 Length=395782 Score = 123 bits (136), Expect = 3e-23 Identities = 175/243 (72%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 150992 GCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAAC 151051 ||||| ||||| | ||||| || || || || || | || || || | |||| Sbjct 22679 GCTGGATCTCTACTTTACGGAAATAATATTATTTCCGATGTCATTATTTATAGTTCTGCA 22738 Query 151052 GCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTC----GATGAATGGCT 151107 ||||| ||| ||||||| || || || |||||||| | || || ||||||||| | Sbjct 22739 GCTATTGGTTTGCACTTTTACCCAATATGGGAAGCTACGTCCGTCCGTTGATGAATGGTT 22798 Query 151108 CTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTA 151167 |||| |||||||||| |||| |||| | |||||| | ||||| | | ||| Sbjct 22799 ACACAATGGTGGTCCTTGTGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA 22858 Query 151168 CATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTG 151226 ||||||||||||||||||||| || ||| |||||||||| || ||||| ||| |||| Sbjct 22859 CATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCAACCTTGGAT-TGCTGTTG 22917 Query 151227 CAT 151229 ||| Sbjct 22918 CAT 22920 >seq407 Length=272206 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 152851 TTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATG 152910 || ||||| | ||||| |||||||||| || || ||||| ||||| | ||||||||| Sbjct 61894 TTTCGATTTATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAACTATTTCATATG 61953 Query 152911 ATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTA 152970 ||||| ||||| ||| | || || | ||| ||||| | ||| ||| |||||| || | Sbjct 61954 ATGGGAGTTGCCGGTGTATTAGGGGCGGCTTTGCTCTGTGCTATTRATGGTGCTATTCTC 62013 Query 152971 GAGAATACTTTGTATCAAGATGGTGA 152996 || |||||||| | | |||||||||| Sbjct 62014 GAAAATACTTTATTTGAAGATGGTGA 62039 >seq60 Length=520799 Score = 102 bits (112), Expect = 9e-17 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 153164 CTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAA 153223 || ||||| | | || || |||| || | |||||||| || || || | ||| ||| Sbjct 267590 CTCTTGGAGTAGTCGGCCTAGCTCCGAACTTACGTGCTTATGACTTCGTTTMTCAGRAAA 267531 Query 153224 TCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACG 153283 | | || |||||||||||||||||||||| ||||| || || ||||| || || |||| Sbjct 267530 TTCGTGCAGCAGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACG 267471 Query 153284 AAGGTCTTCGTGCTTGG 153300 | ||| ||||||||||| Sbjct 267470 AGGGTATTCGTGCTTGG 267454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549562243828320