Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq139 93.3 3e-14 seq187 86.0 5e-12 >seq139 Length=432677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||||||||| | ||||| || || || ||| |||| ||| | Sbjct 178786 ATGCAGATATTTGTCAAAACCCTTACCGGAAAGACTATAACCCTCGATGTGGAAAGTCCT 178727 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||||||| || ||| || || |||||||| ||| | || ||||| Sbjct 178726 GATACTGTCGAAAGTGTCAAATCCAAAATACAAGACAAAGAGGGCATCCCGACAGATCAG 178667 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||||| | |||| | || || |||||| Sbjct 178666 CAGAGGCTAATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGAACCCTAGCTGACTACAAC 178607 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || ||||| || | || ||||| | | || |||| |||| Sbjct 178606 ATTCAGAAGGAATCAACCCTTCATCTGGTGCTCCGTCTTAGAGGTGGAA 178558 >seq187 Length=363338 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || |||||||| ||||| ||| | || ||| | Sbjct 22222 ATGCAAATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCTTGGAGGTTGAGAGCTCC 22163 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || || ||| ||||| || || | ||| |||||| Sbjct 22162 GACACCATAGACAACGTCAAGGCCAAAATTCAAGACAAGGAGGGAATTCCCCCGGATCAG 22103 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || ||||||||||||||||| | | | || | || ||||||||| Sbjct 22102 CAGAGGCTCATCTTCGCCGGTAAACAGCTGGAGGACGGCCGCACCCTAGCTGATTACAAC 22043 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||| ||||| |||| || | || || || || Sbjct 22042 ATCCAGAAGGAGAGTACCCTGCACTTGGTTCTACGTCTCCGTGGTGG 21996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412797544124708